Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS33010	BPHYT_RS33015	BPHYT_RS33020	BPHYT_RS33025	BPHYT_RS33030
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.6	-1.2	N.D.	-0.2	-3.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB	-0.2	+0.3	N.D.	+0.1	-4.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.1	-1.2	N.D.	+0.1	-2.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.2	+0.7	N.D.	-0.7	-2.1
phage	24hr PHYTO3 MOI 10	-0.2	+0.5	N.D.	-0.8	-1.2
carbon source	2-Deoxy-D-Ribose (C)	+0.1	+0.6	N.D.	-0.3	-1.7
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	+0.3	-0.1	N.D.	+0.5	-1.9
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB	-1.3	+0.3	N.D.	+0.5	-0.7
carbon source	D-Glucose (C)	+0.1	+0.6	N.D.	-0.0	-1.9
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	+0.3	+0.5	N.D.	+0.4	-1.9
carbon source	2-Deoxy-D-ribonic lithium salt (C)	-0.1	+0.7	N.D.	+1.0	-1.7
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	+0.6	+0.9	N.D.	-0.2	-1.3
phage	36hr PHYTO6 MOI 0.1	+0.2	+0.9	N.D.	+0.6	-1.5
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.3	+1.7	N.D.	-0.6	-0.8
carbon source	Protocatechuic Acid (C)	+0.9	+0.5	N.D.	+0.3	-1.5
in planta	Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	+0.5	-1.2	N.D.	+0.2	+0.9
in planta	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1	-0.6	+1.0	N.D.	+0.8	-0.7
carbon source	Protocatechuic Acid (C)	-1.0	+0.2	N.D.	+0.4	+1.1
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	-0.8	-0.1	N.D.	+0.8	+1.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+1.4	+0.6	N.D.	-0.7	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.3	-0.8	N.D.	+0.4	+2.4
supernatant control	Vogels_fungal_media; pH 5.5	+1.1	+0.7	N.D.	+0.5	-0.6
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.6	+0.5	N.D.	-0.1	+2.1
in planta	Plant=Zea_mays; PlantTreatment=None; sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=15_days	-0.2	+0.9	N.D.	+0.1	+1.6
nitrogen source	L-Citrulline (N)	+0.4	+0.5	N.D.	+0.0	+1.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.6	+1.9	N.D.	+0.3	+1.1
motility	outer cut, LB soft agar motility assay	+0.7	+0.5	N.D.	+0.2	+1.5
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	+0.9	+0.3	N.D.	+0.2	+1.6
carbon source	Suberic (C)	+1.1	+0.8	N.D.	+0.3	+1.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.8	+0.1	N.D.	-0.3	+4.6