Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS33005	BPHYT_RS33010	BPHYT_RS33015	BPHYT_RS33020	BPHYT_RS33025
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	-0.6	-1.2	N.D.	-0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	-0.3	-0.6	N.D.	-0.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	-0.4	-0.8	N.D.	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	N.D.	-0.9	-0.4	N.D.	+0.3
in planta	Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	N.D.	+0.5	-1.2	N.D.	+0.2
phage	24hr PHYTO3 MOI 10	N.D.	-0.2	+0.5	N.D.	-0.8
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB	N.D.	-1.3	+0.3	N.D.	+0.5
carbon source	Protocatechuic Acid (C)	N.D.	-1.0	+0.2	N.D.	+0.4
carbon source	Phenylacetic 5 mM (C)	N.D.	-1.0	+0.5	N.D.	+0.2
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	N.D.	-0.8	-0.1	N.D.	+0.8
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	+0.2	+0.7	N.D.	-0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	+0.9	+0.3	N.D.	-0.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	-0.3	+1.7	N.D.	-0.6
phage	36hr PHYTO4 MOI 1	N.D.	+0.8	+0.5	N.D.	-0.2
in planta	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1	N.D.	-0.6	+1.0	N.D.	+0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	+1.4	+0.6	N.D.	-0.7
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	N.D.	+0.6	+0.9	N.D.	-0.2
carbon source	Sebacic (C)	N.D.	+0.9	+0.7	N.D.	-0.3
motility	outer cut, LB soft agar motility assay	N.D.	+0.7	+0.8	N.D.	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	N.D.	+0.1	+0.9	N.D.	+0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	N.D.	-0.6	+1.9	N.D.	+0.3
phage	36hr PHYTO6 MOI 0.1	N.D.	+0.2	+0.9	N.D.	+0.6
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	N.D.	+0.5	+1.1	N.D.	+0.0
carbon source	adipate (C)	N.D.	+0.4	+0.8	N.D.	+0.5
carbon source	2-Deoxy-D-ribonic lithium salt (C)	N.D.	-0.1	+0.7	N.D.	+1.0
carbon source	Protocatechuic Acid (C)	N.D.	+0.9	+0.5	N.D.	+0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	N.D.	+0.0	+1.5	N.D.	+0.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	+1.6	+0.3	N.D.	+0.3
carbon source	Suberic (C)	N.D.	+1.1	+0.8	N.D.	+0.3
supernatant control	Vogels_fungal_media; pH 5.5	N.D.	+1.1	+0.7	N.D.	+0.5