Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS32985	BPHYT_RS32990	BPHYT_RS32995	BPHYT_RS33000	BPHYT_RS33005
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.6	-0.8	-0.6	N.D.	N.D.
carbon source	Phenylacetic 5 mM (C)	-0.4	-0.6	-0.9	N.D.	N.D.
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.7	+0.0	-0.6	N.D.	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.4	-0.3	-0.5	N.D.	N.D.
supernatant control:fungal media	R2A with Vogels_fungal_media 0.8X	-0.7	+0.0	-0.6	N.D.	N.D.
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.9	-0.1	-0.2	N.D.	N.D.
replicable vector efficiency	Conjugation on LB_DAP agar plate with WM3064 carrying pBBR1-MCS5; outgrowth in LB_gent50	-0.3	-0.2	-0.7	N.D.	N.D.
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.0	-0.7	-0.5	N.D.	N.D.
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days	-0.6	+0.2	-0.5	N.D.	N.D.
lb_dap plate control	LB_DAP agar plate, outgrowth in LB	-0.6	-0.5	+0.2	N.D.	N.D.
carbon source	D-Glucose (C)	+0.1	-0.8	-0.2	N.D.	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-1.2	-0.1	+0.4	N.D.	N.D.
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.9	+0.4	-0.4	N.D.	N.D.
phage	36hr PHYTO1 MOI 10	-0.7	+0.2	-0.2	N.D.	N.D.
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days	+0.4	-0.7	-0.2	N.D.	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.6	+0.5	-0.3	N.D.	N.D.
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB	+0.6	-0.3	-0.7	N.D.	N.D.
phage	24hr PHYTO2 MOI 0.1	-0.9	+0.2	+0.3	N.D.	N.D.
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.4	-0.6	+0.6	N.D.	N.D.
motility	outer cut, LB soft agar motility assay	-0.2	+0.5	-0.5	N.D.	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.7	+0.3	+0.4	N.D.	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.4	-0.4	+0.7	N.D.	N.D.
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	-0.2	+0.7	-0.3	N.D.	N.D.
nitrogen source	L-Isoleucine (N)	-0.1	+0.7	-0.3	N.D.	N.D.
carbon source	2-Deoxy-D-ribonic lithium salt (C)	+0.5	-0.6	+0.5	N.D.	N.D.
motility	outer cut, LB soft agar motility assay	+0.5	+0.3	-0.3	N.D.	N.D.
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	+0.8	-0.3	+0.3	N.D.	N.D.
supernatant control	Vogels_fungal_media; pH 5.5	+0.8	-0.1	+0.3	N.D.	N.D.
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.0	+0.6	+0.9	N.D.	N.D.
carbon source	Malonic (C)	+1.0	+0.6	+0.4	N.D.	N.D.