Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS32960 and BPHYT_RS32965 are separated by 92 nucleotidesBPHYT_RS32965 and BPHYT_RS32970 are separated by 271 nucleotidesBPHYT_RS32970 and BPHYT_RS32980 are separated by 785 nucleotidesBPHYT_RS32980 and BPHYT_RS32985 are separated by 418 nucleotides BPHYT_RS32960: BPHYT_RS32960 - short-chain dehydrogenase, at 2,974,087 to 2,974,812 _RS32960 BPHYT_RS32965: BPHYT_RS32965 - HxlR family transcriptional regulator, at 2,974,905 to 2,975,300 _RS32965 BPHYT_RS32970: BPHYT_RS32970 - glutathione S-transferase, at 2,975,572 to 2,976,204 _RS32970 BPHYT_RS32980: BPHYT_RS32980 - carboxylesterase, at 2,976,990 to 2,978,699 _RS32980 BPHYT_RS32985: BPHYT_RS32985 - hypothetical protein, at 2,979,118 to 2,980,053 _RS32985
Group Condition BPHYT_RS32960 BPHYT_RS32965 BPHYT_RS32970 BPHYT_RS32980 BPHYT_RS32985
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.8 N.D. -0.6 -0.4 -0.2
temperature LB, 37C +0.3 N.D. -0.5 -0.2 -0.8
supernatant control Vogels_fungal_media; pH 5.5 -1.0 N.D. -0.6 -0.3 +0.8
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB -1.5 N.D. +0.1 +0.0 +0.4
vitamin With vitamins t1 -0.4 N.D. -0.6 +0.4 -0.3
phage 24hr PHYTO2 MOI 0.1 +0.9 N.D. -0.6 +0.0 -0.9
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.3 N.D. +0.8 -0.0 -0.9
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days -0.8 N.D. -0.1 +0.1 +0.8
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.2 N.D. +0.7 -0.3 -0.6
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X -0.5 N.D. +0.5 -0.3 +0.4
phage 24hr PHYTO MOI 0.1 +1.0 N.D. -0.1 -0.5 -0.2
nophagecontrol 36hr Phyto Lib only +1.0 N.D. -0.5 -0.1 -0.1
phage P. phyto PHYTO2 MOI 1 +0.7 N.D. -0.7 -0.0 +0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.6 N.D. +0.4 +0.2 -0.9
phage 36hr PHYTO1 MOI 10 +1.1 N.D. -0.5 +0.1 -0.3
phage 24hr PHYTO10 MOI 10 +1.2 N.D. -0.2 -0.3 -0.2
phage 24hr PHYTO3 MOI 10 +1.1 N.D. -0.4 -0.3 +0.1
phage 36hr PHYTO7 MOI 1 +1.0 N.D. +0.2 -0.5 -0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.6 N.D. +0.7 -0.2 -0.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.6 N.D. +0.6 +0.1 -0.5
phage 24hr PHYTO10 MOI 10 +1.2 N.D. -0.3 -0.1 +0.1
agar plate interaction control Parafilmed volatile agar plate with no fungus +1.4 N.D. +0.0 +0.0 -0.4
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB +0.2 N.D. +0.4 -0.3 +0.8
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.9 N.D. +1.0 -0.4 -0.2
carbon source Malonic (C) -0.7 N.D. +1.0 +0.1 +1.0
phage 36hr PHYTO8 MOI 10 +1.2 N.D. -0.2 +0.1 +0.2
phage 24hr PHYTO2 MOI 0.1 +1.1 N.D. +0.3 +0.4 -0.3
phage 24hr PHYTO6 MOI 10 +1.2 N.D. +0.5 -0.1 +0.0
phage 24hr PHYTO2 MOI 1 +1.2 N.D. +0.3 +0.1 -0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.6 N.D. +1.2 -0.1 -0.1
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