Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS32675	BPHYT_RS32680	BPHYT_RS32685	BPHYT_RS32690	BPHYT_RS32695
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB	+0.0	-0.6	-0.2	-1.8	-0.4
phage	24hr PHYTO9 MOI 0.1	-2.9	+0.2	+0.0	+0.5	-0.4
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB	-0.1	-0.3	-0.5	-1.4	-0.2
in planta	Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	-0.5	-0.5	-0.3	-0.3	-0.7
nitrogen source	NAG (N)	-1.2	-0.5	-0.2	-0.4	+0.4
phage	24hr PHYTO2 MOI 1	-2.2	+0.2	+0.1	+0.3	-0.2
in planta	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1	+0.2	-0.5	+0.2	-1.4	-0.2
in planta	Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-1.5	-0.3	-0.1	+0.2	-0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.4	-0.3	-0.6	-0.5	-0.5
supernatant control	Vogels_fungal_media; pH 5.5	-1.1	-0.1	+0.3	-0.3	-0.3
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	-0.5	-0.4	-0.8	+0.4	-0.0
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	-0.8	-0.7	-0.4	+0.7	-0.1
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	-0.5	-0.6	-0.4	+0.5	-0.2
nitrogen source	L-Isoleucine (N)	-0.9	+0.1	-0.2	+0.5	-0.4
nophagecontrol	36hr Phyto Lib Only	-1.4	-0.1	+0.3	+0.3	+0.1
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	-0.4	-0.6	-0.8	+0.4	+0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.4	-0.2	-0.2	-0.8	+0.8
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.7	-0.4	-0.4	-0.6	-0.1
phage	24hr PHYTO4 MOI 0.1	-1.2	+0.3	+0.2	+0.2	+0.2
phage	24hr PHYTO1 MOI 10	-1.3	+0.1	+0.6	+0.3	-0.0
phage	36hr PHYTO11 MOI 0.1	-0.9	+0.5	+0.3	+0.4	-0.4
carbon source	adipate (C)	-1.0	+0.2	-0.3	+0.9	+0.1
temperature	LB 37C	-0.7	+0.4	+0.2	+0.7	-0.3
phage	36hr PHYTO4 MOI 1	-1.1	+0.1	+0.2	+1.0	+0.4
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.9	+0.1	+0.8	-0.5	-0.1
phage	P. phyto PHYTO2 MOI 1	+0.2	+0.3	-0.5	+0.7	+0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.6	+0.4	+0.3	-0.3	+1.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+1.1	+0.3	+0.3	+0.6	+0.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+1.4	+0.5	+0.1	+0.1	+0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+1.8	+0.3	+0.2	+0.2	+0.6