Fitness for 5 genes in Burkholderia phytofirmans PsJN

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 321 experiments or choose conditions or try the comparative fitness browser

500 ntBPHYT_RS32655 and BPHYT_RS32660 are separated by 448 nucleotidesBPHYT_RS32660 and BPHYT_RS32665 are separated by 176 nucleotidesBPHYT_RS32665 and BPHYT_RS32670 are separated by 244 nucleotidesBPHYT_RS32670 and BPHYT_RS32675 overlap by 4 nucleotides BPHYT_RS32655: BPHYT_RS32655 - LysR family transcriptional regulator, at 2,902,335 to 2,903,222 _RS32655 BPHYT_RS32660: BPHYT_RS32660 - chemotaxis protein CheY, at 2,903,671 to 2,904,039 _RS32660 BPHYT_RS32665: BPHYT_RS32665 - MFS transporter, at 2,904,216 to 2,905,595 _RS32665 BPHYT_RS32670: BPHYT_RS32670 - aldolase, at 2,905,840 to 2,906,652 _RS32670 BPHYT_RS32675: BPHYT_RS32675 - 2-methylcitrate dehydratase, at 2,906,649 to 2,908,037 _RS32675
Group Condition BPHYT_RS32655 BPHYT_RS32660 BPHYT_RS32665 BPHYT_RS32670 BPHYT_RS32675
phage 24hr PHYTO9 MOI 0.1 +0.3 N.D. +0.1 -0.1 -2.9
phage 24hr PHYTO2 MOI 1 -0.0 N.D. -0.0 -0.4 -2.2
phage 24hr PHYTO10 MOI 10 -0.4 N.D. -0.1 -0.1 -1.3
phage 24hr PHYTO4 MOI 0.1 -0.4 N.D. +0.0 -0.3 -1.2
phage 36hr PHYTO8 MOI 10 -0.5 N.D. +0.1 -0.6 -0.8
phage 36hr PHYTO8 MOI 0.1 -0.5 N.D. -0.3 -0.6 -0.4
supernatant control Vogels_fungal_media; pH 5.5 -0.4 N.D. -0.2 +0.0 -1.1
nophagecontrol 36hr Phyto Lib Only +0.1 N.D. +0.0 -0.2 -1.4
phage 36hr PHYTO6 MOI 1 -0.4 N.D. +0.1 -0.4 -0.8
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.1 N.D. +0.3 +0.1 -1.5
phage 36hr PHYTO2 MOI 1 +0.1 N.D. +0.1 -0.8 -0.7
nophagecontrol 36hr Phyto Lib only -0.4 N.D. +0.2 -0.4 -0.6
nitrogen source L-Isoleucine (N) -0.5 N.D. +0.3 -0.0 -0.9
phage 36hr PHYTO4 MOI 1 -0.2 N.D. +0.1 +0.3 -1.1
phage 24hr PHYTO1 MOI 10 -0.0 N.D. +0.3 +0.2 -1.3
phage P. phyto corn MOI 0.1 -0.1 N.D. +0.3 -0.4 -0.8
phage 24hr PHYTO3 MOI 10 -0.5 N.D. +0.0 -0.6 +0.5
carbon source 2-Deoxy-D-Ribose (C) -0.6 N.D. +0.2 +0.4 -0.4
phage 24hr PHYTO3 MOI 0.1 -0.5 N.D. +0.0 -0.3 +1.0
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days +0.6 N.D. +0.1 +0.3 -0.9
phage P. phyto corn MOI 1 -0.4 N.D. +0.1 +0.6 +0.5
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.3 N.D. +0.2 +0.3 +0.8
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days +0.6 N.D. +0.3 +0.4 -0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.3 N.D. +0.2 +0.0 +1.0
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.6 N.D. +0.3 +0.1 +0.7
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.5 N.D. +0.2 -0.1 +1.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.3 N.D. +0.3 +0.5 +0.7
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.6 N.D. +0.4 -0.1 +1.8
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.8 N.D. +0.2 +0.7 +1.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.8 N.D. +0.4 +0.4 +1.4
remove
BPHYT_RS32655
plot		 remove
BPHYT_RS32660
plot		 remove
BPHYT_RS32665		 remove
BPHYT_RS32670
plot		 remove
BPHYT_RS32675
plot