Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS32645	BPHYT_RS32650	BPHYT_RS32655	BPHYT_RS32660	BPHYT_RS32665
nitrogen source	L-Lysine (N)	+0.1	-3.8	+0.1	N.D.	-0.2
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB	-0.3	-1.0	-0.0	N.D.	-0.0
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	-0.2	-0.6	-0.5	N.D.	-0.0
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB	-0.2	-0.2	-0.3	N.D.	-0.4
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB	-0.4	-0.5	+0.2	N.D.	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.0	-0.6	-0.2	N.D.	-0.2
carbon source	2-Deoxy-D-ribonic lithium salt (C)	+0.1	+0.2	-0.6	N.D.	-0.2
nitrogen source	L-Glutamic (N)	+0.4	+0.1	-0.6	N.D.	-0.2
carbon source	Phenylacetic 5 mM (C)	-0.3	+0.5	-0.3	N.D.	-0.3
phage	36hr PHYTO8 MOI 0.1	+0.2	+0.2	-0.5	N.D.	-0.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.3	-0.3	-0.4	N.D.	+0.1
in planta	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1	+0.2	-0.6	+0.2	N.D.	-0.1
nitrogen source	L-Isoleucine (N)	+0.2	-0.2	-0.5	N.D.	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.5	-0.2	-0.5	N.D.	+0.0
phage	36hr PHYTO6 MOI 10	+0.3	+0.2	-0.6	N.D.	+0.2
phage	36hr PHYTO6 MOI 1	+0.3	+0.2	-0.4	N.D.	+0.1
r2a control	R2A control	+0.3	-0.4	+0.3	N.D.	+0.1
phage	24hr PHYTO6 MOI 0.1	+0.3	+0.2	-0.4	N.D.	+0.1
phage	36hr PHYTO8 MOI 10	+0.4	+0.5	-0.5	N.D.	+0.0
nophagecontrol	36hr Phyto Lib only	+0.5	+0.2	-0.4	N.D.	+0.1
phage	36hr PHYTO8 MOI 10	+0.5	+0.3	-0.5	N.D.	+0.1
phage	36hr PHYTO2 MOI 0.1	+0.4	+0.3	-0.4	N.D.	+0.1
phage	24hr PHYTO10 MOI 1	+0.3	+0.4	-0.2	N.D.	+0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	+0.2	-0.3	+0.7	N.D.	+0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	+0.2	-0.0	+0.6	N.D.	+0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.0	+0.3	+0.6	N.D.	+0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	+0.2	+0.1	+0.7	N.D.	+0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.0	+0.2	+0.8	N.D.	+0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.2	+0.4	+0.6	N.D.	+0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.0	+0.5	+0.8	N.D.	+0.4