Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS32605	BPHYT_RS32610	BPHYT_RS32615	BPHYT_RS32620	BPHYT_RS32625
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB	-0.9	-0.4	-0.7	-0.4	-0.3
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB	-0.6	-0.2	-0.8	-0.2	-0.3
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB	-0.6	-0.5	-0.2	-0.4	-0.2
supernatant control	Vogels_fungal_media 0.1X	-0.5	-0.3	-0.3	-0.4	-0.3
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	-0.7	-0.3	-0.3	-0.1	-0.3
phage	24hr PHYTO10 MOI 10	-0.8	+0.1	-0.1	-0.5	-0.0
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB	+0.1	-0.2	-0.4	-0.4	-0.4
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days	-1.0	+0.2	-0.1	-0.1	-0.1
supernatant control	Vogels_fungal_media 0.1X	+0.2	-0.3	-0.5	-0.3	-0.1
motility	outer cut, LB soft agar motility assay	-0.9	-0.2	+0.2	-0.1	-0.1
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	-1.1	-0.0	-0.1	+0.2	+0.1
carbon source	2-Deoxy-D-ribonic lithium salt (C)	-0.8	-0.5	+0.2	+0.1	+0.2
supernatant control	Vogels_fungal_media; pH 5.5	+0.8	-0.4	-0.3	-0.5	-0.2
phage	36hr PHYTO10 MOI 10	+0.5	+0.1	-0.2	-0.4	-0.3
phage	24hr PHYTO3 MOI 10	+0.8	-0.1	+0.1	-0.4	+0.0
nitrogen source	L-Alanine (N)	+0.9	-0.1	-0.3	-0.1	+0.2
phage	24hr PHYTO6 MOI 0.1	+1.3	-0.2	+0.2	-0.1	-0.1
carbon source	L-Fucose (C)	+0.9	+0.1	+0.2	-0.2	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.7	+0.1	+0.6	+0.2	-0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+1.0	+0.2	-0.2	+0.2	+0.4
in planta	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1	+1.0	+0.5	+0.3	-0.1	-0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+1.0	+0.3	-0.2	+0.3	+0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.7	+0.2	+0.1	+0.4	+0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.8	+0.2	+0.1	+0.2	+0.3
in planta	Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	+1.4	-0.0	+0.2	+0.1	+0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+1.0	+0.1	+0.2	+0.3	+0.3
in planta	Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	+1.6	+0.1	+0.3	+0.1	-0.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+1.3	+0.2	+0.0	+0.2	+0.3
motility	outer cut, LB soft agar motility assay	+1.7	-0.0	+0.5	-0.1	+0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+1.5	+0.3	-0.3	+0.4	+0.4