Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS32590	BPHYT_RS32595	BPHYT_RS32600	BPHYT_RS32605	BPHYT_RS32610
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB	N.D.	-1.2	-0.2	-0.6	-0.5
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB	N.D.	-0.5	-0.9	-0.6	-0.2
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	N.D.	-0.5	-0.3	-0.7	-0.3
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB	N.D.	+0.2	-0.7	-0.9	-0.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	-1.0	-0.0	-0.7	+0.0
supernatant control	Vogels_fungal_media 0.1X	N.D.	+0.1	-0.8	-0.5	-0.3
supernatant control	Vogels_fungal_media; pH 5.5	N.D.	-0.7	-0.9	+0.8	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	N.D.	-1.3	-0.3	+0.8	-0.2
phage	P. phyto PHYTO2 MOI 1	N.D.	-0.7	+0.6	-0.6	+0.0
nutrient	L-Serine	N.D.	+0.8	+0.2	-0.7	-0.1
phage	P. phyto PHYTO2 MOI 1	N.D.	+0.5	+0.2	-0.8	+0.3
phage	24hr PHYTO10 MOI 10	N.D.	+0.7	+0.2	-0.8	+0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	-0.8	+0.6	+0.3	+0.2
carbon source	Suberic (C)	N.D.	-0.7	-0.1	+0.9	+0.3
phage	24hr PHYTO1 MOI 1	N.D.	+0.7	+0.7	-0.6	-0.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	-0.8	+0.2	+1.0	+0.3
carbon source	Malonic (C)	N.D.	+1.1	+0.5	-0.6	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	N.D.	+1.4	+0.0	+0.2	-0.2
phage	24hr PHYTO6 MOI 0.1	N.D.	+0.4	+0.1	+1.3	-0.2
motility	outer cut, LB soft agar motility assay	N.D.	-0.3	+0.2	+1.7	-0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	+0.7	+0.5	+0.5	+0.1
nophagecontrol	24hr Phyto Lib Only	N.D.	+0.5	+0.5	+0.7	+0.0
in planta	Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	N.D.	+0.3	-0.0	+1.6	+0.1
in planta	Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	N.D.	+0.3	+0.3	+1.4	-0.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	+0.5	+0.3	+1.3	+0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	+0.1	+0.4	+1.5	+0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	N.D.	+3.0	+0.1	-0.5	-0.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	N.D.	+2.6	+0.3	-0.3	+0.2
in planta	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1	N.D.	+0.2	+1.2	+1.0	+0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	N.D.	+2.7	+0.4	-0.2	+0.1