Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS32530	BPHYT_RS32535	BPHYT_RS32540	BPHYT_RS32545	BPHYT_RS32550
in planta	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1	-0.4	-0.6	-0.9	N.D.	N.D.
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	-0.6	-0.2	-0.8	N.D.	N.D.
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	-0.4	-0.2	-0.9	N.D.	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.1	+0.1	-1.4	N.D.	N.D.
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	-0.2	-0.3	-0.9	N.D.	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.3	-0.5	-0.9	N.D.	N.D.
carbon source	Phenylacetic 5 mM (C)	-1.0	+0.2	-0.1	N.D.	N.D.
nitrogen source	L-Lysine (N)	+0.3	-0.5	-0.6	N.D.	N.D.
in planta	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10	+0.7	-0.3	-1.1	N.D.	N.D.
phage	36hr PHYTO1 MOI 10	+0.4	-0.3	-0.7	N.D.	N.D.
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.5	-0.7	-0.1	N.D.	N.D.
nitrogen source	L-Asparagine (N)	+0.3	+0.4	-0.6	N.D.	N.D.
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.2	-0.6	+0.7	N.D.	N.D.
vitamin	With vitamins t1	-0.7	+0.3	+0.6	N.D.	N.D.
stress	Nickel (II) chloride 1 mM	-0.5	+0.4	+0.4	N.D.	N.D.
carbon source	2-Deoxy-D-ribonic lithium salt (C)	-0.5	+0.2	+0.7	N.D.	N.D.
phage	24hr PHYTO6 MOI 10	+0.6	-0.4	+0.3	N.D.	N.D.
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.4	-0.4	+0.6	N.D.	N.D.
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.4	+1.0	+0.1	N.D.	N.D.
carbon source	Sebacic (C)	+0.2	-0.3	+0.8	N.D.	N.D.
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	-0.6	+0.8	+0.5	N.D.	N.D.
replicable vector efficiency	Conjugation on LB_DAP agar plate with WM3064 carrying pBBR1-MCS5; outgrowth in LB_gent50	+0.4	-0.2	+0.7	N.D.	N.D.
motility	inner cut, LB soft agar motility assay	-0.1	+0.5	+0.6	N.D.	N.D.
tn7 efficiency	Conjugation on LB_DAP agar plate with WM3064 carrying pRH19; outgrowth in LB_gent50	+0.6	-0.1	+0.6	N.D.	N.D.
carbon source	adipate (C)	+0.2	+0.2	+0.9	N.D.	N.D.
phage	36hr PHYTO3 MOI 1	+0.5	+0.1	+0.9	N.D.	N.D.
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	+0.0	+0.7	+1.0	N.D.	N.D.
phage	24hr PHYTO9 MOI 10	+0.8	+0.4	+0.8	N.D.	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.1	+0.4	+1.7	N.D.	N.D.
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.4	+0.4	+2.4	N.D.	N.D.