Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS32515	BPHYT_RS32520	BPHYT_RS32525	BPHYT_RS32530	BPHYT_RS32535
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	-0.3	-0.1	-1.4	-0.4	-0.2
phage	36hr PHYTO4 MOI 1	-0.4	-0.6	-1.5	+0.5	-0.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X	+0.5	-0.1	-2.4	-0.2	-0.0
carbon source	L-Alanine (C)	-0.1	-0.4	-1.4	+0.1	-0.2
phage	24hr PHYTO MOI 0.1	-0.0	-0.6	-1.5	+0.2	-0.0
phage	24hr PHYTO11 MOI 0.1	+0.1	-0.6	-1.5	-0.1	+0.1
phage	24hr PHYTO4 MOI 10	-0.3	-1.1	-0.8	+0.3	-0.1
carbon source	2-Deoxyadenosine 5-monophosphate 5 mM (C)	-0.2	+0.6	-2.6	+0.0	+0.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.1	-0.5	-1.3	-0.0	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.2	-0.4	-1.5	-0.1	+0.2
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	+0.3	-0.0	-1.7	-0.2	+0.2
phage	36hr PHYTO1 MOI 10	-0.4	+0.0	-1.0	+0.6	-0.4
in planta	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10	+0.1	-0.6	-1.0	+0.7	-0.3
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	+0.4	+0.4	-1.2	-0.5	-0.2
nutrient	casaminos	-0.1	+0.5	-1.9	+0.2	+0.3
nitrogen source	L-Asparagine (N)	+0.2	+0.1	-1.9	+0.3	+0.4
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	+0.8	+0.8	-1.9	-0.6	+0.2
carbon source	adipate (C)	-0.3	+0.5	-1.5	+0.2	+0.2
in planta	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1	+0.1	+1.5	-1.3	-0.4	-0.6
vitamin	With vitamins t1	-0.1	-0.7	+0.8	-0.7	+0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.1	-0.6	+0.5	+0.5	-0.7
phage	36hr PHYTO8 MOI 10	+0.0	+0.6	-1.2	+0.4	+0.3
phage	24hr PHYTO9 MOI 10	+0.4	+0.0	-1.1	+0.8	+0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	-0.4	-0.4	+1.3	+0.2	+0.0
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	-0.2	+1.0	-0.9	+0.0	+0.7
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+1.1	-0.4	-0.5	-0.4	+1.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.4	-0.3	+0.8	-0.2	+0.7
phage	36hr PHYTO7 MOI 1	-0.2	+0.8	+0.4	+0.7	-0.3
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	-0.5	-0.1	+1.6	+0.3	+0.2
phage	P. phyto PHYTO2 MOI 1	+0.5	+0.6	+1.0	-0.3	+0.8