Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS32435 and BPHYT_RS32440 are separated by 9 nucleotidesBPHYT_RS32440 and BPHYT_RS32445 are separated by 48 nucleotidesBPHYT_RS32445 and BPHYT_RS32450 are separated by 294 nucleotidesBPHYT_RS32450 and BPHYT_RS32455 are separated by 194 nucleotides BPHYT_RS32435: BPHYT_RS32435 - formate dehydrogenase-N subunit beta, at 2,849,606 to 2,850,538 _RS32435 BPHYT_RS32440: BPHYT_RS32440 - formate dehydrogenase, at 2,850,548 to 2,852,977 _RS32440 BPHYT_RS32445: BPHYT_RS32445 - sulfate ABC transporter substrate-binding protein, at 2,853,026 to 2,853,616 _RS32445 BPHYT_RS32450: BPHYT_RS32450 - beta-xylosidase, at 2,853,911 to 2,854,168 _RS32450 BPHYT_RS32455: BPHYT_RS32455 - segregation protein A, at 2,854,363 to 2,855,427 _RS32455
Group Condition BPHYT_RS32435 BPHYT_RS32440 BPHYT_RS32445 BPHYT_RS32450 BPHYT_RS32455
carbon source Phenylacetic 5 mM (C) -0.5 -0.4 -0.4 -0.1 -0.7
in planta Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days -0.9 +0.2 -0.3 -0.3 -0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.8 -0.1 -0.3 -0.2 -0.3
carbon source Suberic (C) -0.7 +0.0 -0.6 -0.3 -0.2
phage 24hr PHYTO9 MOI 0.1 -0.3 -0.1 -0.5 -0.2 -0.6
carbon source Phenylacetic 5 mM (C) -0.2 -0.3 -0.8 +0.0 -0.3
phage 24hr PHYTO2 MOI 0.1 +0.2 -0.3 -0.3 -0.5 -0.5
phage 24hr PHYTO9 MOI 10 -0.9 +0.1 +0.3 -0.1 -0.3
phage 24hr PHYTO7 MOI 10 -0.4 -0.3 +0.2 +0.2 -0.6
nitrogen source Uridine (N) -0.8 -0.2 -0.1 -0.1 +0.4
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.4 -0.2 -1.0 +0.2 -0.2
phage 24hr PHYTO3 MOI 10 +0.7 -0.2 -0.2 -0.5 -0.4
nophagecontrol 24hr Phyto Lib Only +0.3 -0.1 +0.4 -0.7 -0.1
phage 36hr PHYTO8 MOI 0.1 +1.1 -0.1 -0.0 -0.1 -0.6
nophagecontrol 36hr Phyto Lib only +0.8 -0.2 +0.3 -0.7 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +1.1 -0.1 -0.8 -0.2 +0.4
phage 36hr PHYTO11 MOI 0.1 +0.7 -0.1 +0.3 -0.5 +0.1
motility outer cut, LB soft agar motility assay +1.1 -0.1 +0.0 -0.2 -0.1
motility outer cut, LB soft agar motility assay +0.9 -0.1 +0.3 -0.0 -0.3
in planta Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 +1.5 -0.1 +0.0 -0.6 -0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +1.2 -0.0 +0.0 -0.6 +0.3
nitrogen source Putrescine (N) +0.6 +0.2 +0.2 -0.4 +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.8 +0.2 -0.2 +0.1 +0.4
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days +0.7 -0.1 -0.0 +0.8 -0.2
phage 24hr PHYTO6 MOI 1 +1.0 -0.3 -0.0 +0.2 +0.3
phage 36hr PHYTO1 MOI 1 +0.9 -0.0 -0.1 +0.2 +0.4
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) +0.5 +0.4 +0.5 -0.4 +0.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.1 +0.3 +0.4 +0.6 +0.5
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.8 +0.2 +0.1 +0.3 +0.5
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.9 +0.2 +0.0 +0.3 +0.6
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