Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS32430	BPHYT_RS32435	BPHYT_RS32440	BPHYT_RS32445	BPHYT_RS32450
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.8	-0.3	-0.2	-0.1	-0.4
carbon source	Phenylacetic 5 mM (C)	-0.4	-0.5	-0.4	-0.4	-0.1
carbon source	Sebacic (C)	-0.4	-0.9	-0.0	-0.1	-0.2
carbon source	Suberic (C)	-0.1	-0.7	+0.0	-0.6	-0.3
carbon source	2-Deoxy-D-Ribose (C)	-0.4	-1.0	-0.1	+0.0	-0.1
carbon source	Sebacic (C)	-0.5	-0.6	+0.1	+0.0	-0.4
in planta	Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	+0.1	-0.9	+0.2	-0.3	-0.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.0	+0.4	-0.2	-1.0	+0.2
phage	24hr PHYTO9 MOI 10	+0.2	-0.9	+0.1	+0.3	-0.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB	+0.3	-0.8	-0.2	+0.2	+0.1
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	+0.3	+0.4	-0.2	-0.4	-0.3
phage	24hr PHYTO1 MOI 10	+0.2	+0.5	-0.2	-0.3	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.2	-0.5	+0.1	+0.7	-0.3
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.4	+0.8	-0.2	+0.1	-0.3
nophagecontrol	24hr Phyto Lib Only	+0.1	+0.3	-0.1	+0.4	-0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.1	+1.1	-0.1	-0.8	-0.2
phage	24hr PHYTO3 MOI 10	+0.3	+0.7	-0.2	-0.2	-0.5
nophagecontrol	36hr Phyto Lib Only	+0.2	+0.7	-0.2	-0.4	-0.2
nophagecontrol	36hr Phyto Lib only	-0.1	+0.8	-0.2	+0.3	-0.7
phage	36hr PHYTO11 MOI 0.1	-0.1	+0.7	-0.1	+0.3	-0.5
phage	24hr PHYTO6 MOI 1	-0.6	+1.0	-0.3	-0.0	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.2	+1.2	-0.0	+0.0	-0.6
phage	36hr PHYTO8 MOI 10	-0.1	+0.8	-0.3	+0.3	-0.1
in planta	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10	-0.1	+1.5	-0.1	+0.0	-0.6
motility	outer cut, LB soft agar motility assay	+0.0	+1.1	-0.1	+0.0	-0.2
carbon source	2-Deoxyadenosine 5-monophosphate 5 mM (C)	+0.2	+0.5	+0.4	+0.5	-0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.3	-0.1	+0.3	+0.4	+0.6
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	+0.2	+0.7	-0.1	-0.0	+0.8
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.3	+0.8	+0.2	+0.1	+0.3
in planta	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1	+0.2	+0.4	+0.2	+0.9	+0.1