Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

Or view all 321 experiments or choose conditions or try the comparative fitness browser

Group	Condition	BPHYT_RS32420	BPHYT_RS32425	BPHYT_RS32430	BPHYT_RS32435	BPHYT_RS32440
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.4	-0.8	-0.8	-0.3	-0.2
carbon source	Phenylacetic 5 mM (C)	-0.6	-0.5	-0.4	-0.5	-0.4
carbon source	Phenylacetic 5 mM (C)	-0.6	-1.0	-0.0	-0.2	-0.3
carbon source	Sebacic (C)	+0.1	-0.3	-0.4	-0.9	-0.0
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB	+0.1	-0.6	+0.3	-0.8	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.2	-0.7	-0.1	-0.6	+0.0
carbon source	2-Deoxy-D-ribonic lithium salt (C)	-0.0	-0.4	-0.9	+0.3	-0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.0	-0.5	-0.7	+0.2	-0.1
phage	36hr PHYTO2 MOI 1	-0.5	-0.4	+0.2	+0.2	-0.3
phage	24hr PHYTO6 MOI 1	-0.1	-0.5	-0.6	+1.0	-0.3
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB	+0.5	-0.8	+0.3	-0.1	+0.2
stress	Paraquat dichloride 0.064 mg/ml	+0.3	-1.1	-0.0	+0.7	+0.2
in planta	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1	-0.9	+0.3	+0.2	+0.4	+0.2
phage	36hr PHYTO11 MOI 0.1	+0.2	-0.5	+0.0	+0.7	-0.4
nophagecontrol	36hr Phyto Lib Only	-0.0	-0.5	+0.2	+0.7	-0.2
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.0	+0.1	-0.4	+0.8	-0.2
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.6	+0.8	-0.4	-0.8	+0.0
phage	36hr PHYTO8 MOI 10	-0.5	+0.1	+0.3	+0.5	-0.2
nophagecontrol	36hr Phyto Lib only	+0.4	-0.3	-0.1	+0.8	-0.2
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	+0.4	-0.4	+0.2	+0.7	-0.1
lb_dap plate control and outgrow on gent	LB_DAP agar plate, outgrowth in LB_gent	-0.0	+0.4	-0.4	+0.8	+0.1
in planta	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10	-0.4	-0.0	-0.1	+1.5	-0.1
supernatant control:fungal media	R2A with Vogels_fungal_media 0.8X	-0.3	+0.4	+0.3	+0.7	-0.1
phage	24hr PHYTO2 MOI 0.1	-0.3	+0.1	+0.3	+0.9	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.3	-0.1	-0.1	+1.1	-0.1
carbon source	2-Deoxyadenosine 5-monophosphate 5 mM (C)	+0.6	-0.4	+0.2	+0.5	+0.4
motility	outer cut, LB soft agar motility assay	+0.1	+0.3	+0.0	+1.1	-0.1
motility	outer cut, LB soft agar motility assay	+0.4	+0.1	+0.2	+0.9	-0.1
phage	P. phyto PHYTO2 MOI 1	+0.6	+0.7	+0.4	-0.3	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.4	+0.3	-0.2	+1.2	-0.0