Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS32320	BPHYT_RS32325	BPHYT_RS32330	BPHYT_RS32335	BPHYT_RS32340
nophagecontrol	24hr Phyto Lib Only	-0.3	+0.1	+0.3	-1.9	-0.6
phage	36hr PHYTO1 MOI 10	+0.2	-0.1	-0.1	-1.0	-1.0
phage	36hr PHYTO6 MOI 10	+0.1	+0.1	+0.3	-0.8	-1.5
phage	36hr PHYTO4 MOI 1	-0.1	+0.0	+0.6	-1.3	-1.0
vitamin	With vitamins t1	+0.4	-0.4	-0.2	-0.7	-0.8
phage	P. phyto PHYTO2 MOI 1	-0.2	-0.2	+0.7	-1.1	-0.9
phage	24hr PHYTO MOI 0.1	-0.3	+0.5	+0.0	-1.1	-0.6
phage	24hr PHYTO10 MOI 10	-0.5	+0.2	+0.3	+0.6	-2.1
nitrogen source	L-Phenylalanine (N)	+0.1	-0.1	+0.4	-0.9	-0.8
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.9	+0.6	+0.5	-1.4	+0.1
phage	36hr PHYTO10 MOI 10	+0.3	+0.3	+0.2	-0.3	-1.3
phage	24hr PHYTO2 MOI 1	-0.8	+0.1	+0.3	+0.5	-0.8
phage	P. phyto corn MOI 0.1	+0.6	+0.1	+0.2	-0.9	-0.4
phage	24hr PHYTO3 MOI 10	-0.5	+0.1	+0.6	+0.4	-0.9
r2a control	R2A control	-0.6	-0.4	+0.0	+1.1	-0.3
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.2	+0.2	+0.7	-0.6	-0.5
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	-0.4	-0.7	+0.8	+1.1	-0.7
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	-0.6	+0.4	-0.3	+0.2	+0.7
phage	24hr PHYTO6 MOI 1	-0.0	+0.1	+0.8	+0.5	-0.8
phage	36hr PHYTO11 MOI 1	+0.4	-0.4	+0.5	+0.6	-0.5
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.0	-0.4	+0.1	+1.3	-0.4
in planta	Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	-0.2	+0.1	-0.3	+1.4	-0.3
phage	24hr PHYTO4 MOI 0.1	-0.1	+0.5	+0.6	+0.6	-0.8
lb_dap plate control and outgrow on gent	LB_DAP agar plate, outgrowth in LB_gent	+0.3	+0.6	-0.2	+0.8	-0.7
phage	36hr PHYTO2 MOI 1	+0.2	-0.1	+0.3	-0.6	+1.2
phage	36hr PHYTO6 MOI 0.1	-0.5	+0.4	+0.1	+0.7	+0.5
in planta	Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	-0.4	+0.1	+0.0	+1.5	+0.2
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB	+0.3	+0.5	+0.5	-0.4	+0.9
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.7	+0.7	-0.3	+1.0	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+1.3	+0.4	+0.1	+0.6	+0.3