Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS32260 and BPHYT_RS32265 overlap by 12 nucleotidesBPHYT_RS32265 and BPHYT_RS32270 are separated by 393 nucleotidesBPHYT_RS32270 and BPHYT_RS32275 are separated by 937 nucleotidesBPHYT_RS32275 and BPHYT_RS32280 overlap by 4 nucleotides BPHYT_RS32260: BPHYT_RS32260 - hypothetical protein, at 2,807,479 to 2,807,787 _RS32260 BPHYT_RS32265: BPHYT_RS32265 - transposase, at 2,807,776 to 2,809,371 _RS32265 BPHYT_RS32270: BPHYT_RS32270 - transposase, at 2,809,765 to 2,810,160 _RS32270 BPHYT_RS32275: BPHYT_RS32275 - membrane protein, at 2,811,098 to 2,812,048 _RS32275 BPHYT_RS32280: BPHYT_RS32280 - membrane protein, at 2,812,045 to 2,812,782 _RS32280
Group Condition BPHYT_RS32260 BPHYT_RS32265 BPHYT_RS32270 BPHYT_RS32275 BPHYT_RS32280
temperature LB, 37C -2.7 -0.4 -0.2 -0.7 -0.2
phage 36hr PHYTO8 MOI 10 -0.9 -0.2 -0.4 -0.7 -1.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -3.2 -0.2 -0.1 +0.5 -0.9
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -1.8 -0.4 -0.3 -0.0 -1.4
phage P. phyto PHYTO2 MOI 1 -1.7 -0.2 -0.7 +0.1 -1.1
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB -3.7 +0.5 -0.1 -0.3 +0.0
supernatant control Vogels_fungal_media 0.1X -4.3 +0.3 +0.0 +0.1 +0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days -2.6 -0.1 +1.0 -0.0 -1.3
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days -2.5 +0.1 +0.4 -1.0 -0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -2.3 -0.3 -0.1 +0.3 -0.6
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X -2.7 +0.5 +0.2 -0.6 -0.3
phage 24hr PHYTO4 MOI 10 -0.2 -0.5 +0.5 -1.1 -1.7
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X -2.9 +0.2 -0.4 +0.3 -0.1
phage 24hr PHYTO9 MOI 10 -1.5 +0.1 +0.5 -0.7 -1.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -2.1 -0.0 -0.7 +0.4 -0.3
phage 24hr PHYTO9 MOI 0.1 -0.8 -0.2 +0.5 -0.5 -1.6
supernatant control Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB -2.9 +0.2 +0.4 -0.5 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -2.2 -0.3 -0.5 +0.1 +0.4
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -2.2 +0.0 -0.1 +0.5 -0.7
phage 36hr PHYTO11 MOI 0.1 +0.3 +0.4 -1.0 +0.2 -2.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days -2.4 -0.0 +0.7 +0.2 -0.2
carbon source 2-Deoxy-D-ribonic lithium salt (C) -2.4 +0.1 -0.2 +0.7 +0.3
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -2.3 +0.2 -0.0 -0.1 +0.8
phage 36hr PHYTO2 MOI 1 +0.8 +0.5 -1.3 -0.0 -1.2
carbon source adipate (C) -2.2 +0.1 -0.2 +0.6 +0.4
phage 24hr PHYTO6 MOI 10 +1.5 -0.1 -0.1 -0.6 -1.8
nophagecontrol 24hr Phyto Lib Only +1.7 -0.2 +0.1 -0.2 -1.5
phage 24hr PHYTO10 MOI 10 +2.0 -0.2 +0.1 -0.4 -1.4
carbon source succinate (C) -1.5 +0.1 +0.1 +0.5 +1.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.2 +0.0 +2.4 +0.3 -1.3
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