Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS32250	BPHYT_RS32255	BPHYT_RS32260	BPHYT_RS32265	BPHYT_RS32270
supernatant control	Vogels_fungal_media 0.1X	-0.3	N.D.	-4.3	+0.3	+0.0
phage	P. phyto PHYTO2 MOI 1	-1.2	N.D.	-1.7	-0.2	-0.7
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB	-0.4	N.D.	-3.7	+0.5	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.7	N.D.	-2.1	-0.0	-0.7
temperature	LB, 37C	-0.1	N.D.	-2.7	-0.4	-0.2
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB	-1.7	N.D.	-1.5	-0.1	-0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-1.4	N.D.	-0.7	-0.3	-0.9
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-2.0	N.D.	-0.9	+0.1	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.4	N.D.	-3.2	-0.2	-0.1
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	-0.8	N.D.	-2.9	+0.2	+0.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.3	N.D.	-2.8	-0.3	-0.2
carbon source	D-Alanine (C)	-0.9	N.D.	-1.7	-0.2	-0.1
carbon source	Xylitol (C)	+0.2	N.D.	-2.6	+0.0	-0.4
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.7	N.D.	-1.6	+0.2	-0.7
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X	+0.5	N.D.	-2.9	+0.2	-0.4
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	-0.5	N.D.	-2.6	+0.1	+0.3
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.7	N.D.	-1.9	+0.3	-0.3
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	-0.3	N.D.	-2.7	+0.5	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.7	N.D.	-2.2	-0.3	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.5	N.D.	-2.3	-0.3	-0.1
carbon source	2-Deoxy-D-ribonic lithium salt (C)	+0.3	N.D.	-2.4	+0.1	-0.2
supernatant control	Vogels_fungal_media 0.1X	+0.1	N.D.	-2.5	+0.4	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.7	N.D.	-2.2	-0.3	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.5	N.D.	-1.8	-0.4	-0.3
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	+0.2	N.D.	-2.5	+0.1	+0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	+0.2	N.D.	-2.4	-0.0	+0.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	+0.7	N.D.	-2.6	-0.1	+1.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	+0.8	N.D.	-1.1	-0.1	+1.1
phage	24hr PHYTO2 MOI 1	-0.4	N.D.	+1.9	-0.2	-0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-1.3	N.D.	-0.2	+0.0	+2.4