Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS32190 and BPHYT_RS32195 are separated by 16 nucleotidesBPHYT_RS32195 and BPHYT_RS32200 are separated by 41 nucleotidesBPHYT_RS32200 and BPHYT_RS32205 are separated by 290 nucleotidesBPHYT_RS32205 and BPHYT_RS32210 are separated by 377 nucleotides BPHYT_RS32190: BPHYT_RS32190 - conjugal transfer protein TraD, at 2,795,704 to 2,796,048 _RS32190 BPHYT_RS32195: BPHYT_RS32195 - type VI secretion protein, at 2,796,065 to 2,796,406 _RS32195 BPHYT_RS32200: BPHYT_RS32200 - lytic transglycosylase, at 2,796,448 to 2,797,092 _RS32200 BPHYT_RS32205: BPHYT_RS32205 - hypothetical protein, at 2,797,383 to 2,797,622 _RS32205 BPHYT_RS32210: BPHYT_RS32210 - hypothetical protein, at 2,798,000 to 2,798,284 _RS32210
Group Condition BPHYT_RS32190 BPHYT_RS32195 BPHYT_RS32200 BPHYT_RS32205 BPHYT_RS32210
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days N.D. N.D. -0.2 N.D. -3.0
phage 24hr PHYTO3 MOI 10 N.D. N.D. +0.0 N.D. -3.0
phage PHYTO3 MOI 0.1 N.D. N.D. -1.3 N.D. -1.2
phage 24hr PHYTO1 MOI 1 N.D. N.D. +0.3 N.D. -2.8
phage P. phyto PHYTO2 MOI 1 N.D. N.D. -0.1 N.D. -2.4
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days N.D. N.D. +0.1 N.D. -2.5
carbon source D-Galacturonic Acid (C) N.D. N.D. -0.0 N.D. -2.2
phage 36hr PHYTO3 MOI 1 N.D. N.D. +0.7 N.D. -2.8
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. N.D. +0.5 N.D. -2.5
phage P. phyto PHYTO2 MOI 0.1 N.D. N.D. +0.2 N.D. -2.0
phage 36hr PHYTO11 MOI 1 N.D. N.D. +0.8 N.D. -2.6
phage 36hr PHYTO6 MOI 10 N.D. N.D. +0.8 N.D. -2.5
phage 24hr PHYTO2 MOI 0.1 N.D. N.D. +0.4 N.D. -2.0
phage 36hr PHYTO10 MOI 1 N.D. N.D. +0.6 N.D. -2.2
phage 36hr PHYTO3 MOI 1 N.D. N.D. +0.6 N.D. -2.2
phage 24hr PHYTO1 MOI 10 N.D. N.D. +0.5 N.D. -2.1
phage 24hr PHYTO9 MOI 10 N.D. N.D. +0.3 N.D. -1.8
nophagecontrol 36hr Phyto Lib Only N.D. N.D. +0.6 N.D. -1.9
phage 24hr PHYTO MOI 0.1 N.D. N.D. +0.7 N.D. -1.9
nophagecontrol 36hr Phyto Lib only N.D. N.D. +0.6 N.D. -1.7
carbon source D-Sorbitol (C) N.D. N.D. -1.4 N.D. +0.7
phage 24hr PHYTO7 MOI 1 N.D. N.D. +1.1 N.D. -1.6
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. +1.2 N.D. -1.7
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. +1.0 N.D. -1.3
phage 24hr PHYTO11 MOI 1 N.D. N.D. +1.1 N.D. -1.2
motility inner cut, LB soft agar motility assay N.D. N.D. -0.7 N.D. +1.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. N.D. +1.3 N.D. +0.8
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. +1.1 N.D. +1.1
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. +1.1 N.D. +1.3
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. +1.2 N.D. +1.4
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BPHYT_RS32190
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BPHYT_RS32195
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