Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS32145	BPHYT_RS32150	BPHYT_RS32155	BPHYT_RS32160	BPHYT_RS32165
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	-0.9	-4.8	-1.0	-0.2	-0.2
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	-1.3	+0.0	-1.4	+0.2	-1.1
supernatant control	Vogels_fungal_media 0.1X	-0.1	-2.5	-0.1	-0.4	-0.5
carbon source	D-Galacturonic Acid (C)	-0.2	-3.0	+0.1	-0.1	-0.3
supernatant control	Vogels_fungal_media; pH 5.5	-0.4	-2.5	-0.6	+0.0	+0.3
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB	-0.4	-1.5	-0.6	+0.0	-0.6
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	-1.0	-0.0	-1.8	+0.1	-0.3
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB	-0.0	-2.4	-0.6	-0.1	+0.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB	-0.2	-0.6	+0.1	-0.2	-1.8
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	-0.9	+0.3	-2.1	+0.1	-0.1
carbon source	Phenylacetic 5 mM (C)	-0.1	+0.1	-1.7	+0.2	-0.9
in planta	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10	-1.3	+0.4	-0.1	+0.2	-1.4
phage	24hr PHYTO4 MOI 10	-0.2	-2.0	-0.4	-0.0	+0.5
carbon source	2-Deoxyadenosine 5-monophosphate 5 mM (C)	-1.3	+0.6	-1.3	+0.4	-0.4
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days	-0.5	+0.8	-1.2	-0.1	-0.5
phage	36hr PHYTO1 MOI 10	+0.5	-3.0	+0.7	-0.0	+0.3
no phage control	No phage control	+0.4	-1.9	+0.5	+0.1	-0.2
phage	PHYTO3 MOI 0.1	+0.4	-2.0	+0.0	+0.2	+0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.5	-0.4	-1.7	+0.2	+1.0
phage	24hr PHYTO MOI 0.1	+0.8	-2.0	+0.7	-0.1	+0.4
phage	24hr PHYTO1 MOI 10	+0.4	-1.6	+0.7	+0.0	+0.3
nitrogen source	L-Serine (N)	-0.2	+1.3	-0.5	+0.5	-0.9
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.4	+1.5	-1.0	+0.0	+0.1
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	-1.2	+1.8	-0.3	+0.0	+0.1
phage	24hr PHYTO10 MOI 1	+0.7	+0.7	+0.8	-0.1	+0.8
phage	36hr PHYTO2 MOI 0.1	+0.7	+0.3	+0.8	+0.4	+0.8
phage	36hr PHYTO3 MOI 1	+0.6	+0.6	+0.7	+0.2	+0.9
phage	36hr PHYTO7 MOI 1	+0.8	+1.4	+0.4	-0.1	+0.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.8	+0.7	+0.6	+0.6	+0.8
motility	outer cut, LB soft agar motility assay	+0.6	+0.3	+1.2	+0.3	+1.0