Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS32125	BPHYT_RS32130	BPHYT_RS32135	BPHYT_RS32140	BPHYT_RS32145
in planta	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10	+0.1	-0.2	+0.0	-0.8	-1.3
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	-0.3	-0.2	-0.2	-0.2	-1.2
in planta	Plant=Zea_mays; PlantTreatment=None; sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=15_days	-0.3	-0.1	-0.1	-0.4	-1.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	-0.1	-0.2	-0.4	+0.1	-1.3
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB	-0.8	-0.5	-0.2	+0.2	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.6	-0.8	+0.4	+0.0	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.9	-0.2	-0.1	+0.4	-0.3
vitamin	No vitamins t1	-0.2	+0.4	-0.2	-0.8	-0.5
vitamin	No vitamins t2	-0.2	+0.3	-0.2	-0.4	-0.7
supernatant control	Vogels_fungal_media; pH 5.5	-0.3	-0.6	-0.3	+0.5	-0.4
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	+0.5	-0.3	-0.1	+0.5	-1.0
phage	36hr PHYTO4 MOI 0.1	-0.3	-0.7	-0.2	+0.1	+0.7
carbon source	Malonic (C)	+0.2	+0.4	+0.3	-0.1	-1.2
carbon source	2-Deoxyadenosine 5-monophosphate 5 mM (C)	+0.7	+0.1	+0.2	+0.2	-1.3
phage	24hr PHYTO11 MOI 1	-0.4	-0.3	-0.3	+0.4	+0.9
phage	36hr PHYTO2 MOI 1	-0.4	+0.2	-0.4	+0.1	+0.7
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.6	-0.3	-0.1	+0.9	+0.2
carbon source	Malonic (C)	-0.2	+0.6	-0.2	+0.8	-0.6
phage	36hr PHYTO6 MOI 0.1	+0.4	-0.3	-0.3	+0.3	+0.5
phage	36hr PHYTO11 MOI 1	+0.2	+0.4	-0.4	-0.1	+0.7
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.3	+0.6	+0.4	-0.3	+0.5
nitrogen source	L-Lysine (N)	+0.7	-0.1	+0.1	-0.3	+0.4
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	+0.4	+1.1	+0.2	-0.4	-0.1
nophagecontrol	24hr Phyto Lib only	+0.4	+0.1	-0.2	+0.4	+0.9
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.1	+0.4	-0.1	+0.6	+0.8
phage	24hr PHYTO9 MOI 10	+0.3	+0.4	-0.3	+1.0	+0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.3	+0.7	+0.1	-0.0	+1.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.6	+0.0	-0.0	+0.7	+0.8
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.7	-0.1	+0.4	+0.5	+0.9
phage	24hr PHYTO9 MOI 0.1	+0.4	+0.1	+0.0	+0.8	+1.0