Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS32000	BPHYT_RS32005	BPHYT_RS32010	BPHYT_RS32015	BPHYT_RS32020
supernatant control	Vogels_fungal_media; pH 5.5	N.D.	N.D.	-0.6	-0.1	-0.3
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB	N.D.	N.D.	-0.2	-0.3	-0.2
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB	N.D.	N.D.	-0.3	+0.2	-0.6
nitrogen source	Ammonium chloride (N)	N.D.	N.D.	+0.1	+0.1	-0.6
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X	N.D.	N.D.	-0.3	-0.4	+0.3
carbon source	2-Deoxyadenosine 5-monophosphate 5 mM (C)	N.D.	N.D.	-0.2	+0.2	-0.4
phage	24hr PHYTO6 MOI 10	N.D.	N.D.	-0.4	-0.1	+0.3
supernatant control	Vogels_fungal_media 0.1X	N.D.	N.D.	-0.3	-0.1	+0.3
in planta	Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	N.D.	N.D.	-0.4	-0.2	+0.4
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	N.D.	N.D.	+0.4	-0.1	-0.3
phage	36hr PHYTO10 MOI 10	N.D.	N.D.	-0.4	+0.0	+0.3
phage	36hr PHYTO3 MOI 1	N.D.	N.D.	+0.3	-0.5	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	N.D.	N.D.	+0.3	+0.3	-0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	N.D.	N.D.	+0.2	+0.3	-0.3
carbon source	L-Fucose (C)	N.D.	N.D.	+0.3	+0.1	-0.3
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB	N.D.	N.D.	-0.3	+0.2	+0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	N.D.	N.D.	+0.3	+0.3	-0.4
phage	P. phyto PHYTO2 MOI 1	N.D.	N.D.	-0.3	-0.0	+0.7
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	N.D.	N.D.	+0.2	-0.2	+0.4
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	N.D.	N.D.	+0.2	-0.2	+0.4
phage	36hr PHYTO9 MOI 0.1	N.D.	N.D.	-0.0	+0.2	+0.7
nophagecontrol	24hr Phyto Lib Only	N.D.	N.D.	+0.1	+0.4	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	N.D.	N.D.	+0.3	+0.3	+0.3
r2a control	R2A control	N.D.	N.D.	+0.3	+0.2	+0.4
nophagecontrol	24hr Phyto Lib only	N.D.	N.D.	+0.0	+0.2	+0.6
in planta	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10	N.D.	N.D.	+0.1	-0.2	+0.9
nophagecontrol	24hr Phyto Lib Only	N.D.	N.D.	+0.0	+0.5	+0.4
r2a control	R2A control	N.D.	N.D.	+0.2	+0.4	+0.4
r2a control	R2A control	N.D.	N.D.	+0.2	+0.5	+0.3
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	N.D.	N.D.	+0.5	+0.2	+0.3