Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

Or view all 321 experiments or choose conditions or try the comparative fitness browser

Group	Condition	BPHYT_RS31965	BPHYT_RS31970	BPHYT_RS31975	BPHYT_RS31980	BPHYT_RS31990
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.2	-0.9	N.D.	-0.2	N.D.
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.1	-1.0	N.D.	-0.3	N.D.
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.2	-0.5	N.D.	-0.6	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.3	-0.7	N.D.	-0.4	N.D.
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.3	-0.6	N.D.	-0.3	N.D.
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.2	-0.6	N.D.	-0.2	N.D.
nitrogen source	L-Phenylalanine (N)	-0.0	-0.7	N.D.	-0.2	N.D.
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.2	-0.4	N.D.	-0.3	N.D.
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.5	-0.5	N.D.	+0.0	N.D.
r2a control	R2A control	-0.2	-0.6	N.D.	+0.1	N.D.
nitrogen source	L-Lysine (N)	+0.0	-0.8	N.D.	+0.2	N.D.
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB	-0.2	+0.3	N.D.	-0.5	N.D.
phage	36hr PHYTO11 MOI 0.1	-0.4	+0.3	N.D.	-0.2	N.D.
tn7 efficiency	Conjugation on LB_DAP agar plate with WM3064 carrying pRH19; outgrowth in LB_gent50	-0.3	+0.4	N.D.	-0.4	N.D.
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB	+0.2	+0.3	N.D.	-0.4	N.D.
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.3	+0.7	N.D.	-0.2	N.D.
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	-0.4	+0.7	N.D.	+0.0	N.D.
phage	36hr PHYTO3 MOI 0.1	-0.4	+0.6	N.D.	+0.2	N.D.
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	-0.4	+0.8	N.D.	-0.0	N.D.
carbon source	D-Alanine (C)	-0.1	+0.7	N.D.	+0.1	N.D.
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days	-0.1	+0.9	N.D.	-0.1	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.1	+0.8	N.D.	+0.1	N.D.
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X	+0.0	+0.9	N.D.	-0.0	N.D.
temperature	LB, 37C	+0.0	+0.9	N.D.	+0.0	N.D.
motility	outer cut, LB soft agar motility assay	+0.1	+0.3	N.D.	+0.5	N.D.
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	-0.1	+1.1	N.D.	+0.1	N.D.
nophagecontrol	24hr Phyto Lib Only	+0.1	+0.6	N.D.	+0.3	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.0	+0.8	N.D.	+0.3	N.D.
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	+0.2	+0.8	N.D.	+0.3	N.D.
motility	inner cut, LB soft agar motility assay	-0.1	+1.4	N.D.	+0.3	N.D.