Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS31960	BPHYT_RS31965	BPHYT_RS31970	BPHYT_RS31975	BPHYT_RS31980
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-1.3	-0.1	-1.0	N.D.	-0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.6	-0.2	-0.6	N.D.	-0.2
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	-1.0	-0.3	-0.1	N.D.	-0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.2	-0.2	-0.9	N.D.	-0.2
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	-1.0	-0.0	-0.0	N.D.	-0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.9	-0.1	-0.2	N.D.	-0.3
nitrogen source	L-Lysine (N)	-0.6	+0.0	-0.8	N.D.	+0.2
nitrogen source	D-Alanine (N)	-0.8	-0.1	-0.4	N.D.	+0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.4	-0.2	-0.5	N.D.	-0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.8	-0.2	-0.2	N.D.	+0.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.8	-0.3	-0.6	N.D.	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.9	-0.3	-0.7	N.D.	-0.4
phage	24hr PHYTO6 MOI 10	-1.0	+0.2	+0.4	N.D.	+0.2
nitrogen source	L-Phenylalanine (N)	+0.8	-0.0	-0.7	N.D.	-0.2
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	-0.3	-0.4	+0.8	N.D.	-0.0
tn7 efficiency	Conjugation on LB_DAP agar plate with WM3064 carrying pRH19; outgrowth in LB_gent50	+0.4	-0.3	+0.4	N.D.	-0.4
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	-0.7	-0.1	+1.1	N.D.	+0.1
carbon source	2-Deoxyadenosine 5-monophosphate 5 mM (C)	+1.1	-0.3	-0.4	N.D.	+0.0
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	+1.1	-0.0	-0.4	N.D.	-0.1
phage	36hr PHYTO6 MOI 0.1	+0.7	-0.4	+0.2	N.D.	+0.3
nitrogen source	NAG (N)	+0.8	-0.3	+0.2	N.D.	+0.2
tn7 efficiency	Conjugation on LB_DAP agar plate with WM3064 carrying pRH19; outgrowth in LB_gent50	+1.0	-0.3	+0.2	N.D.	-0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.9	+0.3	-0.3	N.D.	+0.0
phage	36hr PHYTO3 MOI 0.1	+0.8	-0.4	+0.6	N.D.	+0.2
phage	36hr PHYTO1 MOI 10	+1.2	-0.3	+0.3	N.D.	+0.0
nophagecontrol	36hr Phyto Lib Only	+0.6	-0.1	+0.5	N.D.	+0.2
motility	outer cut, LB soft agar motility assay	+0.9	+0.2	+0.2	N.D.	+0.2
motility	outer cut, LB soft agar motility assay	+0.6	+0.1	+0.3	N.D.	+0.5
carbon source	D-Glucose (C)	+0.9	-0.0	+0.5	N.D.	+0.2
motility	inner cut, LB soft agar motility assay	+1.3	-0.1	+1.4	N.D.	+0.3