Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS31905	BPHYT_RS31910	BPHYT_RS31915	BPHYT_RS31920	BPHYT_RS31925
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-1.2	-2.7	-0.2	-1.0	N.D.
phage	36hr PHYTO2 MOI 1	-1.6	-2.3	+0.1	-0.6	N.D.
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days	-1.0	-2.6	-0.1	-0.4	N.D.
in planta	Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	-1.0	-3.1	-0.0	+0.1	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-1.2	-1.9	-0.3	-0.4	N.D.
carbon source	2-Deoxy-D-ribonic lithium salt (C)	-0.1	-3.4	+0.1	-0.1	N.D.
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.1	-3.0	-0.1	-0.4	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.3	-3.3	+0.0	-0.1	N.D.
carbon source	L-Histidine (C)	+0.0	-3.3	+0.1	+0.1	N.D.
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.4	-1.8	-0.6	-0.2	N.D.
phage	36hr PHYTO8 MOI 10	-2.2	-1.1	+0.4	-0.1	N.D.
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	-0.8	-1.7	+0.1	-0.6	N.D.
replicable vector efficiency	Conjugation on LB_DAP agar plate with WM3064 carrying pBBR1-MCS5; outgrowth in LB_gent50	-0.1	-2.4	+0.0	-0.3	N.D.
phage	P. phyto PHYTO2 MOI 1	-0.8	-3.1	+0.8	+0.3	N.D.
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	-0.9	-1.9	+0.1	+0.1	N.D.
phage	24hr PHYTO3 MOI 1	-0.7	-2.3	+0.5	-0.0	N.D.
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.3	-2.9	+0.2	-0.2	N.D.
phage	P. phyto PHYTO2 MOI 1	-0.7	-1.8	+0.2	-0.2	N.D.
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB	-2.2	-0.9	+0.2	+0.3	N.D.
supernatant control	Vogels_fungal_media 0.1X	-0.7	-2.3	+0.0	+0.5	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.7	-3.4	-0.2	+0.4	N.D.
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.6	-1.3	+0.5	-0.6	N.D.
phage	36hr PHYTO11 MOI 1	-1.2	+0.1	+0.4	-1.2	N.D.
nophagecontrol	24hr Phyto Lib only	-1.9	-0.5	+0.2	+0.3	N.D.
in planta	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1	+0.8	-2.1	-0.4	-0.1	N.D.
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.3	-2.5	+0.4	+0.2	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.5	-2.1	+0.3	+0.0	N.D.
phage	36hr PHYTO1 MOI 10	-1.4	+1.4	+0.7	-0.2	N.D.
carbon source	Suberic (C)	-0.6	+1.4	+0.6	-0.7	N.D.
carbon source	Malonic (C)	+1.0	+1.7	-0.1	-0.2	N.D.