Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS31840 and BPHYT_RS31845 are separated by 43 nucleotidesBPHYT_RS31845 and BPHYT_RS31850 are separated by 295 nucleotidesBPHYT_RS31850 and BPHYT_RS31855 are separated by 28 nucleotidesBPHYT_RS31855 and BPHYT_RS31860 are separated by 764 nucleotides BPHYT_RS31840: BPHYT_RS31840 - anhydrase, at 2,702,140 to 2,702,664 _RS31840 BPHYT_RS31845: BPHYT_RS31845 - sodium:solute symporter, at 2,702,708 to 2,704,129 _RS31845 BPHYT_RS31850: BPHYT_RS31850 - CoA-transferase, at 2,704,425 to 2,705,606 _RS31850 BPHYT_RS31855: BPHYT_RS31855 - FAD-linked oxidase, at 2,705,635 to 2,707,251 _RS31855 BPHYT_RS31860: BPHYT_RS31860 - alcohol dehydrogenase, at 2,708,016 to 2,709,197 _RS31860
Group Condition BPHYT_RS31840 BPHYT_RS31845 BPHYT_RS31850 BPHYT_RS31855 BPHYT_RS31860
phage P. phyto corn MOI 1 -0.9 -0.5 -0.2 -1.7 N.D.
phage 24hr PHYTO8 MOI 1 -3.0 -0.0 -0.2 +0.2 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -1.8 +0.1 -0.1 -0.6 N.D.
motility inner cut, LB soft agar motility assay -1.6 -0.3 +0.1 -0.4 N.D.
phage P. phyto PHYTO2 MOI 0.1 -1.3 -0.2 -0.3 -0.2 N.D.
phage 24hr PHYTO1 MOI 10 -1.9 -0.1 +0.1 -0.2 N.D.
nitrogen source L-Glutamic (N) -2.0 -0.3 -0.2 +0.5 N.D.
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) -1.6 -0.5 -0.1 +0.1 N.D.
in planta Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 -2.0 -0.2 +0.1 +0.0 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -1.4 -0.5 +0.2 +0.1 N.D.
phage 36hr PHYTO10 MOI 10 -2.1 -0.2 +0.3 +0.4 N.D.
carbon source Phenylacetic 5 mM (C) -1.8 +0.1 -0.1 +0.5 N.D.
lb_dap plate control and outgrow on gent LB_DAP agar plate, outgrowth in LB_gent +0.7 -1.1 -0.2 -0.7 N.D.
nophagecontrol 36hr Phyto Lib Only -1.3 +0.2 +0.3 -0.3 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -1.5 +0.4 -0.0 +0.2 N.D.
nophagecontrol 24hr Phyto Lib Only -1.1 +0.3 +0.4 -0.4 N.D.
phage P. phyto PHYTO2 MOI 1 +0.9 -0.5 -0.3 -0.8 N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB -1.3 +0.5 +0.5 +0.2 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +2.3 -0.3 -0.5 -1.4 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +2.2 -0.6 -0.5 -0.9 N.D.
phage 36hr PHYTO9 MOI 1 -1.0 +0.4 +0.5 +0.3 N.D.
phage 24hr PHYTO6 MOI 10 -0.3 +0.6 +0.6 -0.7 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +2.1 -0.5 -0.3 -0.9 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +1.6 -0.5 -0.2 -0.5 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +1.8 -0.2 -0.5 -0.4 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.9 -0.6 +0.2 +0.6 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +2.4 -0.4 -0.3 -0.5 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +2.4 -0.2 -0.2 -0.8 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +2.8 -0.3 -0.2 -0.6 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +2.9 -0.3 -0.4 -0.3 N.D.
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