Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS31705	BPHYT_RS31710	BPHYT_RS31715	BPHYT_RS31720	BPHYT_RS31725
replicable vector efficiency	Conjugation on LB_DAP agar plate with WM3064 carrying pBBR1-MCS5; outgrowth in LB_gent50	+0.2	+0.1	-1.3	-0.9	-0.6
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	-0.4	-0.4	-1.0	-0.1	-0.6
phage	36hr PHYTO11 MOI 0.1	-0.2	-0.1	-0.7	-0.2	-1.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.1	-0.8	-1.0	+0.2	-0.5
in planta	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1	-0.0	-0.2	-1.7	-1.1	+0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.1	-0.1	-1.0	-0.3	-0.5
in planta	Plant=Zea_mays; PlantTreatment=None; sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=15_days	+0.1	-0.4	-0.2	-0.5	-0.8
phage	24hr PHYTO1 MOI 10	+0.0	+0.2	-0.3	-0.5	-1.2
phage	36hr PHYTO7 MOI 1	+0.2	-0.6	-0.2	-0.1	-1.1
phage	36hr PHYTO9 MOI 0.1	-0.2	-0.4	+0.2	-0.5	-0.9
tn7 efficiency	Conjugation on LB_DAP agar plate with WM3064 carrying pRH19; outgrowth in LB_gent50	+0.2	-0.2	-0.9	-0.4	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.3	+0.1	-0.7	+0.2	-0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.5	-0.4	-0.5	+0.1	-0.5
in planta	Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	+0.2	-0.2	+0.3	+0.4	-1.0
nitrogen source	L-Serine (N)	-0.6	-0.1	+0.2	-0.5	+0.7
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.6	+0.4	-0.1	-0.9	-0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.6	-0.1	+0.6	-0.3	-0.6
phage	36hr PHYTO10 MOI 10	+0.1	+0.2	+0.3	+0.5	-0.8
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB	+0.2	-0.1	-0.6	+0.8	+0.4
carbon source	propionate (C)	-0.3	+0.3	+0.4	+0.9	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.2	+0.4	+0.8	-0.5	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.3	+0.1	-0.0	+1.7	-0.2
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.1	-0.2	+0.6	+1.2	-0.1
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days	+0.3	+0.0	+1.0	+0.4	-0.3
phage	24hr PHYTO7 MOI 10	-0.1	+0.5	+0.7	-0.2	+0.6
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	+0.4	-0.2	+0.8	+0.5	+0.0
carbon source	Malonic (C)	+0.4	+0.3	+0.4	-0.3	+0.9
carbon source	Phenylacetic 5 mM (C)	+0.3	+0.7	-0.1	+0.5	+0.6
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.1	+0.1	+0.1	+0.8	+1.3
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	+0.3	+0.6	+1.4	+0.3	+0.4