Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS31505	BPHYT_RS31510	BPHYT_RS31515	BPHYT_RS31520	BPHYT_RS31525
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.2	-1.6	-1.4	-0.4	-0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.2	+0.0	-2.7	-0.4	-0.4
replicable vector efficiency	Conjugation on LB_DAP agar plate with WM3064 carrying pBBR1-MCS5; outgrowth in LB_gent50	-0.4	-0.8	-1.1	-0.2	-0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-1.0	+0.6	-0.9	-0.5	-0.9
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	-1.0	+0.4	-1.7	+0.1	-0.3
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB	-0.4	+0.4	-1.0	+0.2	-1.8
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	+0.5	+0.2	-1.8	-0.3	-0.8
phage	24hr PHYTO2 MOI 0.1	-1.2	-0.2	-0.6	-0.4	+0.5
phage	P. phyto corn MOI 1	-0.8	-1.6	+0.4	-0.0	+0.1
phage	24hr PHYTO3 MOI 10	+0.6	+0.2	-2.7	-0.5	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.3	-1.4	-0.7	-0.2	+0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.9	+0.7	+0.2	-0.6	-0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.4	+0.8	-1.4	+0.4	-0.4
nophagecontrol	36hr Phyto Lib only	+0.9	-0.6	+0.1	-1.1	+0.4
phage	24hr PHYTO11 MOI 1	-0.6	+0.3	+0.7	-1.0	+0.6
phage	36hr PHYTO3 MOI 0.1	+0.4	-0.5	+1.1	-0.3	-0.5
phage	36hr PHYTO4 MOI 0.1	+0.3	-1.0	+0.9	-0.3	+0.5
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	-0.2	+0.4	+1.5	-1.4	+0.2
phage	36hr PHYTO2 MOI 1	-0.4	-0.4	+0.7	-0.4	+1.0
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB	-0.9	+1.3	-0.2	-0.4	+0.7
nophagecontrol	24hr Phyto Lib Only	-0.1	-0.9	+1.2	-0.2	+0.7
phage	36hr PHYTO8 MOI 10	+0.6	-0.4	+1.4	-0.0	-0.5
supernatant control:fungal media	R2A with Vogels_fungal_media 0.8X	+0.6	-0.2	+1.5	+0.1	-0.5
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.3	+0.1	+2.1	+0.2	-0.7
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	+0.5	-0.0	+1.8	+0.1	-0.8
in planta	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1	+0.5	-0.1	+2.1	-0.4	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+1.3	-0.2	+1.0	+0.1	-0.4
phage	36hr PHYTO6 MOI 1	+0.7	-0.5	+1.2	-0.2	+0.7
motility	outer cut, LB soft agar motility assay	+0.6	-0.3	+1.1	+0.1	+1.0
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	-0.1	+1.0	+0.4	+0.7	+1.0