Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS31435 and BPHYT_RS31440 are separated by 271 nucleotidesBPHYT_RS31440 and BPHYT_RS31445 are separated by 876 nucleotidesBPHYT_RS31445 and BPHYT_RS31450 are separated by 127 nucleotidesBPHYT_RS31450 and BPHYT_RS31455 are separated by 355 nucleotides BPHYT_RS31435: BPHYT_RS31435 - LysR family transcriptional regulator, at 2,606,921 to 2,607,823 _RS31435 BPHYT_RS31440: BPHYT_RS31440 - hypothetical protein, at 2,608,095 to 2,608,340 _RS31440 BPHYT_RS31445: BPHYT_RS31445 - rod shape-determining protein MreB, at 2,609,217 to 2,610,248 _RS31445 BPHYT_RS31450: BPHYT_RS31450 - hypothetical protein, at 2,610,376 to 2,611,011 _RS31450 BPHYT_RS31455: BPHYT_RS31455 - electron transporter RnfB, at 2,611,367 to 2,611,954 _RS31455
Group Condition BPHYT_RS31435 BPHYT_RS31440 BPHYT_RS31445 BPHYT_RS31450 BPHYT_RS31455
carbon source 2-Deoxy-D-ribonic lithium salt (C) N.D. -2.9 N.D. -0.7 N.D.
carbon source adipate (C) N.D. -1.2 N.D. -1.2 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -1.5 N.D. -0.8 N.D.
carbon source D-Glucose (C) N.D. -1.9 N.D. -0.2 N.D.
nitrogen source D-Alanine (N) N.D. -1.5 N.D. -0.6 N.D.
tn7 efficiency Conjugation on LB_DAP agar plate with WM3064 carrying pRH19; outgrowth in LB_gent50 N.D. -1.2 N.D. -0.5 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -0.5 N.D. -1.2 N.D.
nitrogen source L-Citrulline (N) N.D. -1.3 N.D. -0.3 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -1.5 N.D. -0.1 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -0.5 N.D. -1.0 N.D.
carbon source Protocatechuic Acid (C) N.D. -0.9 N.D. -0.5 N.D.
carbon source Suberic (C) N.D. -1.4 N.D. -0.1 N.D.
nitrogen source NAG (N) N.D. -1.0 N.D. -0.5 N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB N.D. -0.6 N.D. -0.8 N.D.
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. -1.0 N.D. +0.5 N.D.
phage 24hr PHYTO MOI 0.1 N.D. -0.7 N.D. +0.7 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. -0.6 N.D. +0.7 N.D.
phage P. phyto corn MOI 1 N.D. -0.6 N.D. +0.7 N.D.
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) N.D. +0.8 N.D. -0.6 N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X N.D. +1.2 N.D. -0.3 N.D.
phage 36hr PHYTO3 MOI 1 N.D. +0.8 N.D. +0.5 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. +0.5 N.D. +0.8 N.D.
in planta Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 N.D. +0.7 N.D. +0.7 N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X N.D. +1.4 N.D. +0.1 N.D.
nophagecontrol 36hr Phyto Lib only N.D. +0.9 N.D. +0.7 N.D.
nophagecontrol 24hr Phyto Lib Only N.D. +1.0 N.D. +0.8 N.D.
phage 36hr PHYTO2 MOI 1 N.D. +0.9 N.D. +0.9 N.D.
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days N.D. +1.2 N.D. +0.8 N.D.
phage 24hr PHYTO6 MOI 10 N.D. +1.2 N.D. +1.0 N.D.
carbon source Malonic (C) N.D. +0.9 N.D. +3.5 N.D.
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