Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS31420 and BPHYT_RS31425 are separated by 33 nucleotidesBPHYT_RS31425 and BPHYT_RS31430 are separated by 52 nucleotidesBPHYT_RS31430 and BPHYT_RS31435 are separated by 149 nucleotidesBPHYT_RS31435 and BPHYT_RS31440 are separated by 271 nucleotides BPHYT_RS31420: BPHYT_RS31420 - ABC transporter substrate-binding protein, at 2,603,846 to 2,604,658 _RS31420 BPHYT_RS31425: BPHYT_RS31425 - arginine ABC transporter ATP-binding protein, at 2,604,692 to 2,605,393 _RS31425 BPHYT_RS31430: BPHYT_RS31430 - FAD-dependent oxidoreductase, at 2,605,446 to 2,606,771 _RS31430 BPHYT_RS31435: BPHYT_RS31435 - LysR family transcriptional regulator, at 2,606,921 to 2,607,823 _RS31435 BPHYT_RS31440: BPHYT_RS31440 - hypothetical protein, at 2,608,095 to 2,608,340 _RS31440
Group Condition BPHYT_RS31420 BPHYT_RS31425 BPHYT_RS31430 BPHYT_RS31435 BPHYT_RS31440
carbon source 2-Deoxy-D-ribonic lithium salt (C) N.D. N.D. +0.4 N.D. -2.9
carbon source D-Glucose (C) N.D. N.D. -0.1 N.D. -1.9
nitrogen source D-Alanine (N) N.D. N.D. -0.2 N.D. -1.5
carbon source Suberic (C) N.D. N.D. -0.2 N.D. -1.4
carbon source Suberic (C) N.D. N.D. -0.6 N.D. -0.8
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. +0.1 N.D. -1.5
nitrogen source L-Citrulline (N) N.D. N.D. +0.0 N.D. -1.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. +0.4 N.D. -1.5
tn7 efficiency Conjugation on LB_DAP agar plate with WM3064 carrying pRH19; outgrowth in LB_gent50 N.D. N.D. +0.3 N.D. -1.2
carbon source adipate (C) N.D. N.D. +0.4 N.D. -1.2
nitrogen source Uridine (N) N.D. N.D. +0.4 N.D. -0.9
carbon source Protocatechuic Acid (C) N.D. N.D. +0.4 N.D. -0.9
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days N.D. N.D. -1.1 N.D. +0.6
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. N.D. +0.9 N.D. -1.0
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days N.D. N.D. -1.2 N.D. +1.2
temperature LB, 37C N.D. N.D. +0.6 N.D. +0.7
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X N.D. N.D. -0.0 N.D. +1.4
phage 36hr PHYTO MOI 0.1 N.D. N.D. +0.6 N.D. +0.8
nophagecontrol 24hr Phyto Lib Only N.D. N.D. +0.4 N.D. +1.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. +0.5 N.D. +0.9
nitrogen source L-Lysine (N) N.D. N.D. +1.0 N.D. +0.4
nophagecontrol 36hr Phyto Lib Only N.D. N.D. +0.3 N.D. +1.2
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X N.D. N.D. +0.3 N.D. +1.2
phage 24hr PHYTO MOI 0.1 N.D. N.D. +0.6 N.D. +0.9
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. N.D. +1.3 N.D. +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. +1.4 N.D. +0.3
phage 24hr PHYTO11 MOI 0.1 N.D. N.D. +0.6 N.D. +1.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. N.D. +1.4 N.D. +0.5
carbon source Malonic (C) N.D. N.D. +1.4 N.D. +0.9
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. +2.4 N.D. +0.4
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