Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS31180	BPHYT_RS31185	BPHYT_RS31190	BPHYT_RS31195	BPHYT_RS31200
nitrogen source	L-Lysine (N)	N.D.	-0.7	-0.0	-0.3	-1.5
stress	Bacitracin 0.25 mg/ml	N.D.	-0.3	-0.5	-0.9	-0.7
phage	36hr PHYTO1 MOI 1	N.D.	-0.2	-0.3	-1.2	-0.4
phage	36hr PHYTO6 MOI 10	N.D.	-0.6	-0.0	-1.0	-0.1
phage	36hr PHYTO10 MOI 10	N.D.	-0.1	-0.6	-0.8	-0.3
phage	P. phyto PHYTO2 MOI 1	N.D.	-0.6	+0.1	-0.5	-0.7
phage	24hr PHYTO10 MOI 1	N.D.	+0.3	-0.4	-0.9	-0.5
carbon source	Phenylacetic 5 mM (C)	N.D.	-1.1	+0.2	-0.4	+0.0
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	N.D.	-0.5	-0.1	+0.5	-0.7
phage	PHYTO3 MOI 0.1	N.D.	+0.2	+0.2	-0.9	-0.3
nophagecontrol	36hr Phyto Lib only	N.D.	-0.4	-0.1	-0.7	+0.5
carbon source	Suberic (C)	N.D.	-0.2	-0.5	-0.5	+0.5
in planta	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1	N.D.	-0.2	-0.7	+0.6	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	N.D.	-0.5	+0.1	+0.6	-0.6
phage	36hr PHYTO4 MOI 1	N.D.	+0.1	+0.4	-1.0	+0.2
vitamin	No vitamins t2	N.D.	+0.3	-0.2	+0.5	-0.8
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	+0.4	-0.9	+0.6	-0.1
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	N.D.	+0.4	-0.9	+0.4	+0.1
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days	N.D.	+0.1	-0.7	+0.3	+0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	N.D.	+0.6	-0.3	-0.4	+0.4
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	N.D.	+0.1	+1.0	-0.2	-0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	+0.4	-0.6	+0.5	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	N.D.	-0.2	+0.5	-0.4	+0.8
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	N.D.	+0.3	+0.8	-0.4	+0.2
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	N.D.	+0.4	+1.1	-0.1	-0.2
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB	N.D.	+0.6	+0.5	-0.3	+0.5
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	+0.3	+1.0	-0.5	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	+0.8	-0.2	+0.7	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	+0.2	+0.5	-0.2	+1.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	N.D.	+0.2	+0.6	+0.1	+1.0