Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS31155	BPHYT_RS31160	BPHYT_RS31165	BPHYT_RS31170	BPHYT_RS31175
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	+0.1	-0.8	+0.1	-0.7	-0.2
phage	24hr PHYTO9 MOI 0.1	-0.4	-0.7	-0.1	-0.3	+0.2
phage	24hr PHYTO8 MOI 1	-1.1	-0.1	-0.2	-0.1	+0.2
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB	-0.6	-0.1	+0.2	-0.2	-0.5
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.3	-0.5	+0.2	-0.5	-0.0
phage	36hr PHYTO7 MOI 0.1	-0.3	-0.8	+0.2	-0.4	+0.2
supernatant control	Vogels_fungal_media; pH 5.5	+0.1	+0.1	-0.5	-0.5	-0.3
carbon source	Phenylacetic 5 mM (C)	-1.1	+0.5	-0.2	+0.1	-0.4
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB	-0.1	-0.3	+0.4	-0.6	-0.4
nitrogen source	L-Lysine (N)	-1.1	+0.7	-0.6	+0.2	+0.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.9	-0.3	+0.2	+0.0	+0.2
phage	24hr PHYTO3 MOI 10	+0.3	-0.8	+0.2	-0.2	-0.2
phage	24hr PHYTO7 MOI 1	-1.0	-0.2	+0.1	+0.0	+0.4
phage	36hr PHYTO3 MOI 1	-0.4	-0.8	+0.1	+0.2	+0.3
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	-0.4	-0.7	+0.3	+0.2	+0.4
phage	36hr PHYTO10 MOI 10	+0.1	-0.7	+0.5	+0.1	-0.2
motility	outer cut, LB soft agar motility assay	-0.8	-0.3	+0.2	+0.5	+0.2
carbon source	2-Deoxy-D-ribonic lithium salt (C)	-0.8	-0.2	+0.2	+0.2	+0.6
in planta	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1	-0.7	+0.6	-0.1	+0.0	+0.4
carbon source	Suberic (C)	-0.6	+0.8	-0.1	-0.0	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.6	+0.0	+0.5	+0.7	-0.2
carbon source	Azelaic (C)	-0.4	+0.6	-0.0	+0.4	-0.2
phage	36hr PHYTO4 MOI 1	+0.3	-0.5	-0.2	+0.2	+0.5
phage	24hr PHYTO2 MOI 0.1	+0.5	-0.4	-0.1	-0.1	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.1	-0.3	-0.3	+0.5	+0.6
phage	36hr PHYTO11 MOI 0.1	+0.8	-0.4	-0.0	+0.1	+0.3
in planta	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10	-0.0	-0.2	+0.9	+0.3	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.4	+0.5	-0.4	-0.1	+0.5
phage	P. phyto PHYTO2 MOI 0.1	-0.2	+0.7	+0.2	+0.2	-0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.0	+0.3	+0.4	+0.3	+0.6