Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS31095 and BPHYT_RS31100 are separated by 536 nucleotidesBPHYT_RS31100 and BPHYT_RS31105 are separated by 431 nucleotidesBPHYT_RS31105 and BPHYT_RS31110 are separated by 241 nucleotidesBPHYT_RS31110 and BPHYT_RS31115 are separated by 65 nucleotides BPHYT_RS31095: BPHYT_RS31095 - hypothetical protein, at 2,532,209 to 2,532,394 _RS31095 BPHYT_RS31100: BPHYT_RS31100 - AraC family transcriptional regulator, at 2,532,931 to 2,533,923 _RS31100 BPHYT_RS31105: BPHYT_RS31105 - UTP--glucose-1-phosphate uridylyltransferase, at 2,534,355 to 2,535,236 _RS31105 BPHYT_RS31110: BPHYT_RS31110 - hypothetical protein, at 2,535,478 to 2,535,786 _RS31110 BPHYT_RS31115: BPHYT_RS31115 - glucosidase, at 2,535,852 to 2,538,593 _RS31115
Group Condition BPHYT_RS31095 BPHYT_RS31100 BPHYT_RS31105 BPHYT_RS31110 BPHYT_RS31115
nitrogen source L-Lysine (N) N.D. -0.3 N.D. -1.4 -0.2
phage 36hr PHYTO3 MOI 1 N.D. -0.6 N.D. -1.1 +0.0
phage 24hr PHYTO3 MOI 10 N.D. -0.6 N.D. -1.1 +0.1
nitrogen source L-Isoleucine (N) N.D. -0.7 N.D. -0.7 -0.2
phage 36hr PHYTO3 MOI 1 N.D. -0.1 N.D. -1.2 -0.1
phage PHYTO3 MOI 0.1 N.D. -0.3 N.D. -1.2 +0.2
phage 24hr PHYTO9 MOI 10 N.D. +0.2 N.D. -1.4 -0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -0.7 N.D. -0.6 +0.1
phage 24hr PHYTO8 MOI 1 N.D. +0.2 N.D. -1.3 -0.0
phage 24hr PHYTO4 MOI 0.1 N.D. +0.2 N.D. -1.3 +0.0
phage 36hr PHYTO MOI 0.1 N.D. -0.3 N.D. -1.0 +0.2
phage P. phyto PHYTO2 MOI 0.1 N.D. +0.3 N.D. -1.3 -0.0
phage P. phyto corn MOI 0.1 N.D. +0.3 N.D. -1.1 +0.0
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB N.D. +0.2 N.D. -1.2 +0.3
phage 36hr PHYTO1 MOI 10 N.D. -0.5 N.D. -0.6 +0.3
motility outer cut, LB soft agar motility assay N.D. +0.3 N.D. -1.1 +0.1
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. -0.2 N.D. -0.9 +0.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -0.6 N.D. -0.5 +0.5
phage 24hr PHYTO3 MOI 1 N.D. +0.7 N.D. -1.3 +0.1
phage 24hr PHYTO10 MOI 10 N.D. +0.5 N.D. -1.3 +0.3
phage 24hr PHYTO3 MOI 10 N.D. +0.5 N.D. -0.9 -0.1
phage 36hr PHYTO7 MOI 0.1 N.D. +0.2 N.D. -0.9 +0.4
lb_dap plate control and outgrow on gent LB_DAP agar plate, outgrowth in LB_gent N.D. -0.7 N.D. +0.6 -0.2
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. +0.8 N.D. -0.8 -0.2
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X N.D. -0.5 N.D. +0.5 +0.3
carbon source D-Galacturonic Acid (C) N.D. -0.2 N.D. +1.1 -0.3
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days N.D. +0.2 N.D. +1.2 -0.2
nophagecontrol 24hr Phyto Lib Only N.D. +0.6 N.D. +0.9 -0.0
phage 36hr PHYTO4 MOI 1 N.D. -0.2 N.D. +1.5 +0.3
in planta Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 N.D. +0.9 N.D. +1.5 +0.4
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