Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS31020 and BPHYT_RS31025 overlap by 4 nucleotidesBPHYT_RS31025 and BPHYT_RS31030 are separated by 114 nucleotidesBPHYT_RS31030 and BPHYT_RS31035 are separated by 57 nucleotidesBPHYT_RS31035 and BPHYT_RS31040 are separated by 2 nucleotides BPHYT_RS31020: BPHYT_RS31020 - 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, at 2,514,001 to 2,514,555 _RS31020 BPHYT_RS31025: BPHYT_RS31025 - 2-dehydro-3-deoxyphosphooctonate aldolase, at 2,514,552 to 2,515,412 _RS31025 BPHYT_RS31030: BPHYT_RS31030 - tyrosine protein kinase, at 2,515,527 to 2,517,752 _RS31030 BPHYT_RS31035: BPHYT_RS31035 - protein-tyrosine-phosphatase, at 2,517,810 to 2,518,247 _RS31035 BPHYT_RS31040: BPHYT_RS31040 - sugar transporter, at 2,518,250 to 2,519,407 _RS31040
Group Condition BPHYT_RS31020 BPHYT_RS31025 BPHYT_RS31030 BPHYT_RS31035 BPHYT_RS31040
agar plate interaction control Parafilmed volatile agar plate with no fungus -2.0 N.D. -1.0 N.D. -0.9
phage 36hr PHYTO1 MOI 10 -0.7 N.D. -0.0 N.D. -2.2
phage 36hr PHYTO11 MOI 1 -0.9 N.D. +0.1 N.D. -2.0
phage P. phyto PHYTO2 MOI 1 -2.1 N.D. -0.4 N.D. -0.0
nophagecontrol 24hr Phyto Lib Only -1.3 N.D. +0.0 N.D. -1.2
phage 24hr PHYTO3 MOI 10 -1.5 N.D. -1.7 N.D. +0.9
carbon source D-Glucose (C) -0.6 N.D. -0.7 N.D. -1.0
carbon source L-Fucose (C) +0.3 N.D. -1.4 N.D. -0.8
nitrogen source L-Lysine (N) -0.3 N.D. +0.4 N.D. -1.9
phage P. phyto PHYTO2 MOI 1 -2.1 N.D. +0.1 N.D. +0.4
phage 24hr PHYTO1 MOI 10 -1.5 N.D. -0.4 N.D. +0.6
phage 24hr PHYTO4 MOI 10 -1.6 N.D. -0.3 N.D. +0.8
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.9 N.D. +0.6 N.D. -0.8
phage 24hr PHYTO6 MOI 10 -1.4 N.D. -0.2 N.D. +0.8
carbon source 2-Deoxy-D-ribonic lithium salt (C) +1.2 N.D. +0.5 N.D. -2.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +1.2 N.D. -0.7 N.D. -1.0
phage 36hr PHYTO6 MOI 10 -1.3 N.D. -0.1 N.D. +1.0
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days +0.8 N.D. +0.2 N.D. -1.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.9 N.D. +0.5 N.D. -1.5
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.8 N.D. +0.4 N.D. -1.0
phage 36hr PHYTO10 MOI 10 -1.1 N.D. +0.1 N.D. +1.3
phage 36hr PHYTO9 MOI 0.1 +1.1 N.D. +0.4 N.D. -1.0
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days +0.8 N.D. +0.6 N.D. -0.8
nitrogen source L-Citrulline (N) -0.7 N.D. +0.9 N.D. +0.9
nitrogen source L-Isoleucine (N) -0.5 N.D. +1.3 N.D. +0.5
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days +1.2 N.D. +1.0 N.D. -0.7
nutrient L-Histidine +1.5 N.D. +0.4 N.D. -0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.2 N.D. +2.0 N.D. +0.2
stress Bacitracin 0.25 mg/ml +1.2 N.D. +0.7 N.D. +0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.1 N.D. +0.1 N.D. +2.9
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