Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS30935	BPHYT_RS30940	BPHYT_RS30945	BPHYT_RS30950	BPHYT_RS30955
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB	-2.0	-0.2	+0.1	-0.7	-0.5
phage	24hr PHYTO3 MOI 10	-0.1	+0.3	-1.2	-0.4	-0.6
phage	24hr PHYTO6 MOI 10	+0.3	+0.3	-1.2	-1.1	+0.1
carbon source	Phenylacetic 5 mM (C)	+0.2	-1.2	-0.5	+0.4	-0.1
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	-0.8	+0.2	+0.4	-1.0	+0.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB	+0.1	+0.5	-0.7	-0.5	-0.5
lb_dap plate control	LB_DAP agar plate, outgrowth in LB	+0.4	-0.4	-0.9	-0.5	+0.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+1.0	-0.3	-0.8	+0.1	-0.7
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	+0.3	+0.3	-0.4	-0.5	-0.4
carbon source	succinate (C)	+0.1	-1.0	+0.3	+0.3	-0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.3	+0.7	-0.5	-0.1	-0.5
nitrogen source	Ammonium chloride (N)	-0.9	+0.2	+0.6	-0.3	-0.3
phage	36hr PHYTO8 MOI 10	+0.2	+0.4	-0.9	+0.2	-0.5
phage	36hr PHYTO6 MOI 1	+0.2	+0.2	-1.1	+0.4	+0.0
phage	36hr PHYTO11 MOI 0.1	+0.9	+0.5	-0.6	-0.2	-0.4
lb_dap plate control	LB_DAP agar plate, outgrowth in LB	+0.9	-0.6	-0.4	+0.2	+0.1
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.1	+0.1	-0.5	-0.1	-0.4
phage	24hr PHYTO4 MOI 10	+0.0	-0.5	-0.4	+0.8	+0.5
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.9	-0.5	-0.6	+0.3	+0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.5	+0.9	-0.2	-0.7	+0.1
in planta	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10	+0.1	-0.3	-0.6	+0.8	+0.7
carbon source	2-Deoxy-D-ribonic lithium salt (C)	+0.3	+1.0	-0.5	+0.1	-0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.6	-0.6	+0.2	+0.2	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.7	-0.1	+0.4	+0.3	-0.4
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days	-0.2	+0.3	+0.9	-0.5	+0.4
phage	P. phyto PHYTO2 MOI 1	+0.9	+0.1	-0.3	+0.3	+0.5
carbon source	2-Deoxyadenosine 5-monophosphate 5 mM (C)	+1.0	+0.4	+0.9	-0.2	-0.6
in planta	Plant=Zea_mays; PlantTreatment=None; sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=15_days	+0.2	+0.2	+1.2	+0.3	+0.1
carbon source	Xylitol (C)	+0.5	+0.4	+1.0	+0.3	+0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.9	+0.2	+1.0	+0.1	+0.1