Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS30895	BPHYT_RS30900	BPHYT_RS30905	BPHYT_RS30910	BPHYT_RS30915
nitrogen source	L-Lysine (N)	N.D.	-0.6	-0.8	-0.7	-0.4
carbon source	2-Deoxy-D-Ribose (C)	N.D.	-0.7	-1.0	-0.4	-0.4
phage	24hr PHYTO7 MOI 10	N.D.	+0.2	-0.5	-0.4	-0.9
phage	36hr PHYTO3 MOI 1	N.D.	-0.9	-0.2	+0.4	-0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	+0.2	+0.4	-0.2	-1.5
lb_dap plate control	LB_DAP agar plate, outgrowth in LB	N.D.	-0.7	+0.9	-0.3	-0.7
in planta	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1	N.D.	-0.2	-0.1	+0.7	-1.0
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	N.D.	-0.1	+0.1	-1.3	+0.5
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	+0.5	+0.2	-0.4	-1.0
phage	24hr PHYTO4 MOI 10	N.D.	-0.3	-0.8	-0.4	+0.9
phage	36hr PHYTO11 MOI 1	N.D.	-0.5	-0.7	+0.5	+0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	+0.7	+0.3	-0.3	-0.7
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	-0.6	+1.0	+0.7	-1.0
carbon source	Tween 20 (C)	N.D.	-0.0	-0.9	+0.3	+0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	N.D.	-0.2	+1.1	+0.2	-0.8
carbon source	2-Deoxy-D-ribonic lithium salt (C)	N.D.	+0.5	+0.9	+0.5	-1.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	N.D.	+0.5	+0.4	-0.6	+0.5
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	+0.2	+1.5	-0.2	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	N.D.	-0.2	+0.1	-0.3	+1.7
carbon source	Phenylacetic 5 mM (C)	N.D.	+1.0	+0.3	-0.4	+0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	+0.5	+0.7	-0.3	+0.7
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	-0.0	+0.6	+0.0	+1.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	+0.4	+0.8	+0.4	+0.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	+0.2	+0.9	-0.0	+1.0
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	N.D.	+1.0	+0.4	-0.3	+1.1
carbon source	Phenylacetic 5 mM (C)	N.D.	+0.2	+0.8	+0.4	+0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	+1.4	+0.6	+0.3	-0.0
carbon source	D-Glucose 20 mM (C)	N.D.	+0.4	+0.9	+0.1	+0.8
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	+0.1	+0.6	+0.8	+0.8
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	N.D.	+0.7	+1.1	+0.7	+0.3