Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS30860 and BPHYT_RS30865 overlap by 1 nucleotidesBPHYT_RS30865 and BPHYT_RS30870 are separated by 109 nucleotidesBPHYT_RS30870 and BPHYT_RS30875 are separated by 34 nucleotidesBPHYT_RS30875 and BPHYT_RS30880 are separated by 457 nucleotides BPHYT_RS30860: BPHYT_RS30860 - sugar ABC transporter permease, at 2,478,673 to 2,479,662 _RS30860 BPHYT_RS30865: BPHYT_RS30865 - sugar ABC transporter ATP-binding protein, at 2,479,662 to 2,480,432 _RS30865 BPHYT_RS30870: BPHYT_RS30870 - chromate transporter, at 2,480,542 to 2,481,078 _RS30870 BPHYT_RS30875: BPHYT_RS30875 - chromate transporter, at 2,481,113 to 2,481,682 _RS30875 BPHYT_RS30880: BPHYT_RS30880 - peptidase S13, at 2,482,140 to 2,483,774 _RS30880
Group Condition BPHYT_RS30860 BPHYT_RS30865 BPHYT_RS30870 BPHYT_RS30875 BPHYT_RS30880
phage 24hr PHYTO7 MOI 10 -0.1 -1.3 -1.6 N.D. +0.3
in planta Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days -0.5 -0.1 -0.6 N.D. -1.3
nitrogen source L-Lysine (N) -1.7 -0.5 +0.1 N.D. -0.1
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.4 -0.8 -0.6 N.D. -0.7
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.3 -1.0 -0.6 N.D. +0.6
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.9 -0.7 -0.8 N.D. -0.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -1.3 +0.6 -0.7 N.D. +0.2
carbon source Sebacic (C) -1.3 +0.6 -0.4 N.D. +0.5
nitrogen source D-Alanine (N) +0.4 -1.0 +0.5 N.D. -0.5
carbon source Suberic (C) -0.7 -0.5 -0.4 N.D. +1.0
phage 36hr PHYTO4 MOI 1 +1.1 -0.3 -0.6 N.D. -0.5
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB -1.3 +0.7 +0.9 N.D. -0.2
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X -1.3 +0.6 +0.7 N.D. +0.0
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.7 +1.4 -0.7 N.D. +0.2
phage 36hr PHYTO2 MOI 1 +1.3 -0.1 -1.0 N.D. +0.6
carbon source D-Galacturonic Acid (C) -0.2 -0.6 +1.2 N.D. +0.6
carbon source 2-Deoxy-D-ribonic lithium salt (C) +1.1 +0.7 -0.6 N.D. +0.2
phage 24hr PHYTO3 MOI 10 +1.7 -0.1 -0.4 N.D. +0.3
nophagecontrol 24hr Phyto Lib Only +1.0 +0.1 -0.5 N.D. +1.0
phage 24hr PHYTO2 MOI 0.1 +0.8 +1.1 -0.4 N.D. +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.4 +0.5 +1.5 N.D. +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.4 +1.9 -0.2 N.D. +0.5
phage 36hr PHYTO6 MOI 1 +0.6 +1.3 -0.5 N.D. +0.5
phage 36hr PHYTO10 MOI 10 +1.1 +0.9 -0.4 N.D. +0.7
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days +1.8 -0.3 +0.3 N.D. +0.6
phage 24hr PHYTO6 MOI 0.1 +1.1 +0.3 +0.1 N.D. +0.8
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.9 +0.4 -0.1 N.D. +1.4
phage 36hr PHYTO8 MOI 10 +1.4 +0.2 +0.6 N.D. +0.6
phage 24hr PHYTO10 MOI 10 +0.6 +0.5 +0.8 N.D. +1.0
in planta Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 -0.2 +3.6 +0.2 N.D. -0.0
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