Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS30820 and BPHYT_RS30825 are separated by 334 nucleotidesBPHYT_RS30825 and BPHYT_RS30830 are separated by 145 nucleotidesBPHYT_RS30830 and BPHYT_RS30835 are separated by 82 nucleotidesBPHYT_RS30835 and BPHYT_RS30840 are separated by 154 nucleotides BPHYT_RS30820: BPHYT_RS30820 - GntR family transcriptional regulator, at 2,470,894 to 2,471,634 _RS30820 BPHYT_RS30825: BPHYT_RS30825 - extradiol dioxygenase, at 2,471,969 to 2,472,400 _RS30825 BPHYT_RS30830: BPHYT_RS30830 - MFS transporter, at 2,472,546 to 2,473,859 _RS30830 BPHYT_RS30835: BPHYT_RS30835 - hypothetical protein, at 2,473,942 to 2,474,304 _RS30835 BPHYT_RS30840: BPHYT_RS30840 - small mechanosensitive ion channel protein MscS, at 2,474,459 to 2,475,673 _RS30840
Group Condition BPHYT_RS30820 BPHYT_RS30825 BPHYT_RS30830 BPHYT_RS30835 BPHYT_RS30840
nitrogen source L-Lysine (N) -1.0 -1.5 -0.5 N.D. -0.3
phage 36hr PHYTO11 MOI 1 -0.4 -1.5 -0.4 N.D. -0.5
carbon source D-Glucose (C) -0.3 -2.0 -0.1 N.D. -0.2
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days +0.4 -2.0 -1.3 N.D. +0.5
phage 36hr PHYTO10 MOI 10 +0.2 -2.1 -0.4 N.D. +0.2
phage 36hr PHYTO8 MOI 0.1 -0.0 -1.7 +0.3 N.D. -0.2
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -0.1 -1.0 -0.8 N.D. +0.5
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.4 -0.8 -0.9 N.D. +0.0
phage 36hr PHYTO4 MOI 1 +0.3 -1.5 +0.2 N.D. -0.3
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB +0.5 -0.7 -1.4 N.D. +0.5
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days -0.6 -1.2 +0.9 N.D. -0.1
carbon source Phenylacetic 5 mM (C) -1.1 -0.6 +0.2 N.D. +0.6
phage 24hr PHYTO3 MOI 10 -0.4 -1.0 +0.8 N.D. -0.3
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB +0.3 -1.2 -0.3 N.D. +0.3
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.1 -2.2 -0.1 N.D. +1.5
phage 24hr PHYTO2 MOI 1 +0.3 -1.1 +0.5 N.D. -0.3
phage 36hr PHYTO6 MOI 1 +0.7 -1.1 +0.1 N.D. -0.2
phage 36hr PHYTO2 MOI 1 +0.2 -0.9 +1.1 N.D. -0.4
carbon source Malonic (C) +0.6 -1.2 +0.7 N.D. -0.1
phage 36hr PHYTO7 MOI 0.1 -0.1 -1.0 +0.4 N.D. +0.7
carbon source 2-Deoxy-D-ribonic lithium salt (C) -0.4 -0.8 +1.2 N.D. +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.1 -0.9 +1.5 N.D. -0.4
phage 24hr PHYTO7 MOI 10 +0.3 +0.7 +1.2 N.D. -0.9
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.7 +0.9 -0.5 N.D. +0.3
phage 24hr PHYTO MOI 0.1 +0.5 -0.4 +0.7 N.D. +0.6
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.2 +1.0 +0.9 N.D. -0.1
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.5 +0.7 +0.7 N.D. +0.7
carbon source L-Glutamine (C) -0.2 +1.1 +0.6 N.D. +0.3
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.6 +0.4 +0.7 N.D. +1.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.1 +1.6 +0.3 N.D. +0.3
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