Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS30815 and BPHYT_RS30820 are separated by 213 nucleotidesBPHYT_RS30820 and BPHYT_RS30825 are separated by 334 nucleotidesBPHYT_RS30825 and BPHYT_RS30830 are separated by 145 nucleotidesBPHYT_RS30830 and BPHYT_RS30835 are separated by 82 nucleotides BPHYT_RS30815: BPHYT_RS30815 - 2-methylcitrate dehydratase, at 2,469,397 to 2,470,680 _RS30815 BPHYT_RS30820: BPHYT_RS30820 - GntR family transcriptional regulator, at 2,470,894 to 2,471,634 _RS30820 BPHYT_RS30825: BPHYT_RS30825 - extradiol dioxygenase, at 2,471,969 to 2,472,400 _RS30825 BPHYT_RS30830: BPHYT_RS30830 - MFS transporter, at 2,472,546 to 2,473,859 _RS30830 BPHYT_RS30835: BPHYT_RS30835 - hypothetical protein, at 2,473,942 to 2,474,304 _RS30835
Group Condition BPHYT_RS30815 BPHYT_RS30820 BPHYT_RS30825 BPHYT_RS30830 BPHYT_RS30835
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days -0.3 +0.4 -2.0 -1.3 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.7 -0.1 -2.2 -0.1 N.D.
carbon source D-Glucose (C) -0.1 -0.3 -2.0 -0.1 N.D.
phage 36hr PHYTO11 MOI 1 -0.2 -0.4 -1.5 -0.4 N.D.
nitrogen source L-Lysine (N) +0.5 -1.0 -1.5 -0.5 N.D.
phage 36hr PHYTO10 MOI 10 +0.2 +0.2 -2.1 -0.4 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.4 +0.4 -0.8 -0.9 N.D.
phage P. phyto PHYTO2 MOI 1 +0.5 -0.0 -1.2 -0.8 N.D.
nitrogen source Putrescine (N) +0.4 -0.6 -1.3 +0.1 N.D.
carbon source Phenylacetic 5 mM (C) +0.3 -1.1 -0.6 +0.2 N.D.
phage 36hr PHYTO4 MOI 1 -0.3 +0.3 -1.5 +0.2 N.D.
phage 36hr PHYTO8 MOI 0.1 +0.5 -0.0 -1.7 +0.3 N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB +0.9 +0.5 -0.7 -1.4 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days +0.3 -0.6 -1.2 +0.9 N.D.
phage 24hr PHYTO3 MOI 10 +0.0 -0.4 -1.0 +0.8 N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB +0.8 +0.3 -1.2 -0.3 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.7 +0.3 -1.2 -0.1 N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days +0.9 +0.1 -1.2 +0.0 N.D.
phage 36hr PHYTO2 MOI 0.1 +0.6 -0.2 -1.0 +0.5 N.D.
carbon source Malonic (C) -0.2 +0.6 -1.2 +0.7 N.D.
phage 36hr PHYTO6 MOI 1 +0.3 +0.7 -1.1 +0.1 N.D.
carbon source 2-Deoxy-D-ribonic lithium salt (C) +0.1 -0.4 -0.8 +1.2 N.D.
phage 36hr PHYTO2 MOI 1 +0.4 +0.2 -0.9 +1.1 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.4 -0.7 +1.2 -0.0 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.2 +0.1 -0.9 +1.5 N.D.
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.4 +0.7 +0.9 -0.5 N.D.
supernatant control Vogels_fungal_media; pH 5.5 +0.9 +0.4 +0.7 -0.2 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.1 -0.2 +1.0 +0.9 N.D.
phage 24hr PHYTO7 MOI 10 +0.1 +0.3 +0.7 +1.2 N.D.
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.9 -0.0 +0.5 +0.9 N.D.
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