Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS30800	BPHYT_RS30805	BPHYT_RS30810	BPHYT_RS30815	BPHYT_RS30820
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	-2.5	N.D.	-1.7	-0.9	+0.5
phage	36hr PHYTO2 MOI 1	-0.4	N.D.	-3.5	+0.2	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-1.0	N.D.	-0.8	-0.7	-0.3
phage	24hr PHYTO3 MOI 10	-1.8	N.D.	-0.8	-0.3	+0.3
phage	P. phyto PHYTO2 MOI 0.1	-2.0	N.D.	-0.3	-0.2	-0.0
phage	36hr PHYTO1 MOI 1	-1.0	N.D.	-1.3	+0.1	+0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-1.8	N.D.	+0.3	+0.1	-0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.4	N.D.	-2.0	+0.7	-1.0
phage	24hr PHYTO6 MOI 1	-0.8	N.D.	-1.5	+0.6	-0.0
phage	24hr PHYTO6 MOI 10	+0.4	N.D.	-2.9	+0.7	-0.0
phage	36hr PHYTO7 MOI 1	-1.3	N.D.	-0.4	+0.5	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.5	N.D.	-1.4	+0.8	-0.2
replicable vector efficiency	Conjugation on LB_DAP agar plate with WM3064 carrying pBBR1-MCS5; outgrowth in LB_gent50	-1.1	N.D.	-0.8	+0.6	-0.0
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-1.4	N.D.	+0.7	-0.0	-0.5
nophagecontrol	24hr Phyto Lib only	-1.6	N.D.	+0.0	-0.2	+0.6
nitrogen source	L-Lysine (N)	+1.0	N.D.	-1.6	+0.5	-1.0
phage	36hr PHYTO6 MOI 10	-1.4	N.D.	+0.8	+0.6	-0.9
nitrogen source	L-Phenylalanine (N)	-1.2	N.D.	-0.0	+0.7	-0.3
phage	24hr PHYTO3 MOI 0.1	-0.2	N.D.	-1.1	-0.2	+0.9
phage	36hr PHYTO10 MOI 10	-1.8	N.D.	+1.4	+0.2	-0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	-1.7	N.D.	+1.0	+0.5	-0.0
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	-1.0	N.D.	+1.2	+0.1	-0.5
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	+0.1	N.D.	-1.3	+0.9	+0.1
phage	24hr PHYTO2 MOI 0.1	-1.6	N.D.	+1.0	+0.5	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+3.1	N.D.	-2.6	+0.3	-0.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	-0.3	N.D.	+1.5	+0.3	-0.6
motility	outer cut, LB soft agar motility assay	-0.6	N.D.	+1.5	+0.6	-0.3
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB	+1.3	N.D.	-1.0	+0.9	+0.5
phage	24hr PHYTO3 MOI 1	+0.9	N.D.	+1.2	+0.3	+0.0
carbon source	Malonic (C)	+2.7	N.D.	+0.3	-0.2	+0.6