Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS30545	BPHYT_RS30550	BPHYT_RS30555	BPHYT_RS30560	BPHYT_RS30565
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	N.D.	N.D.	-0.7	-0.3	-1.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	N.D.	N.D.	-0.3	-0.2	-1.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	N.D.	N.D.	-1.1	-0.3	-0.2
carbon source	succinate (C)	N.D.	N.D.	-1.3	-0.6	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	N.D.	N.D.	-0.9	-0.1	-0.6
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	N.D.	-0.8	+0.0	-0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	N.D.	-0.9	-0.3	-0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	N.D.	N.D.	-0.1	-0.1	-1.2
carbon source	Suberic (C)	N.D.	N.D.	-0.8	-0.8	+0.2
in planta	Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	N.D.	-0.5	+0.1	-0.9
carbon source	Suberic (C)	N.D.	N.D.	-0.6	-0.7	+0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	N.D.	-1.0	-0.2	+0.4
carbon source	m-Inositol (C)	N.D.	N.D.	-0.5	-0.5	+0.4
carbon source	Phenylacetic 5 mM (C)	N.D.	N.D.	-0.9	+0.5	-0.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB	N.D.	N.D.	+0.3	+0.1	-0.9
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	N.D.	N.D.	-0.7	+0.6	-0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	N.D.	+0.6	-0.5	-0.4
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	N.D.	-0.4	+0.6	-0.3
phage	P. phyto corn MOI 0.1	N.D.	N.D.	+0.2	-0.6	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	N.D.	N.D.	-0.6	+0.9	-0.1
phage	36hr PHYTO4 MOI 1	N.D.	N.D.	+0.3	-0.3	+0.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	N.D.	+0.5	-0.4	+0.6
phage	24hr PHYTO4 MOI 10	N.D.	N.D.	+0.6	+0.6	-0.2
phage	24hr PHYTO2 MOI 0.1	N.D.	N.D.	+0.4	+0.4	+0.5
nophagecontrol	36hr Phyto Lib Only	N.D.	N.D.	+0.4	+0.5	+0.5
phage	P. phyto PHYTO2 MOI 1	N.D.	N.D.	+0.5	+0.6	+0.5
temperature	LB 37C	N.D.	N.D.	-0.1	-0.3	+2.0
phage	24hr PHYTO3 MOI 10	N.D.	N.D.	+0.6	+0.1	+1.1
phage	P. phyto PHYTO2 MOI 0.1	N.D.	N.D.	+0.6	+0.3	+0.9
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	N.D.	+0.9	+0.2	+0.8