Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS30450 and BPHYT_RS30455 are separated by 238 nucleotidesBPHYT_RS30455 and BPHYT_RS30460 are separated by 18 nucleotidesBPHYT_RS30460 and BPHYT_RS30465 are separated by 58 nucleotidesBPHYT_RS30465 and BPHYT_RS30470 are separated by 197 nucleotides BPHYT_RS30450: BPHYT_RS30450 - ABC transporter permease, at 2,389,516 to 2,391,375 _RS30450 BPHYT_RS30455: BPHYT_RS30455 - transketolase, at 2,391,614 to 2,393,575 _RS30455 BPHYT_RS30460: BPHYT_RS30460 - glycerate dehydrogenase, at 2,393,594 to 2,394,559 _RS30460 BPHYT_RS30465: BPHYT_RS30465 - short-chain dehydrogenase, at 2,394,618 to 2,395,394 _RS30465 BPHYT_RS30470: BPHYT_RS30470 - TetR family transcriptional regulator, at 2,395,592 to 2,396,179 _RS30470
Group Condition BPHYT_RS30450 BPHYT_RS30455 BPHYT_RS30460 BPHYT_RS30465 BPHYT_RS30470
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB -0.7 -1.1 +0.3 -4.2 N.D.
nitrogen source L-Isoleucine (N) -2.5 +0.4 -0.3 -1.2 N.D.
carbon source Sebacic (C) -0.1 +0.1 -0.2 -3.2 N.D.
phage 24hr PHYTO11 MOI 1 -2.7 +0.1 -0.7 +0.2 N.D.
phage P. phyto PHYTO2 MOI 1 -2.2 +0.0 -1.3 +0.5 N.D.
nophagecontrol 24hr Phyto Lib Only -2.7 +0.4 -0.3 -0.3 N.D.
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.6 -0.6 +0.1 -2.9 N.D.
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -1.3 +0.6 -0.3 -1.5 N.D.
phage P. phyto PHYTO2 MOI 1 -3.5 -0.2 +0.4 +1.0 N.D.
phage 24hr PHYTO4 MOI 10 -1.9 +1.0 -0.3 -1.0 N.D.
phage 36hr PHYTO7 MOI 0.1 -2.8 +0.0 -0.1 +0.5 N.D.
supernatant control Vogels_fungal_media 0.1X -1.6 +0.3 +0.6 -1.3 N.D.
phage 36hr PHYTO6 MOI 0.1 -2.7 +0.4 -0.5 +0.8 N.D.
phage P. phyto corn MOI 0.1 -2.5 +0.1 -0.3 +0.8 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -2.6 -0.3 +0.7 +0.3 N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB +1.0 -1.3 +0.1 -1.5 N.D.
phage 36hr PHYTO4 MOI 1 -1.1 +0.7 -1.3 +0.4 N.D.
supernatant control Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB -2.4 +0.2 +0.2 +0.8 N.D.
carbon source 2-Deoxy-D-ribonic lithium salt (C) -0.4 +0.8 +0.5 -2.1 N.D.
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days -1.3 +0.3 +1.0 -1.0 N.D.
phage 36hr PHYTO10 MOI 10 +1.2 +0.1 -0.9 -1.4 N.D.
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days -0.8 +0.1 +1.1 -1.3 N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +1.1 +0.4 -0.4 -1.6 N.D.
nophagecontrol 36hr Phyto Lib Only +0.8 +0.8 -0.9 -0.8 N.D.
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days -0.8 -0.9 +0.0 +1.9 N.D.
phage 24hr PHYTO1 MOI 10 +1.8 +0.3 -0.7 -0.9 N.D.
vitamin No vitamins t1 -2.3 +0.6 +0.8 +1.5 N.D.
phage 36hr PHYTO8 MOI 10 +2.1 +0.0 -1.3 -0.2 N.D.
in planta Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 +0.7 -0.6 -0.8 +1.6 N.D.
phage 24hr PHYTO3 MOI 10 +1.4 +0.2 -1.0 +0.6 N.D.
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