Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS30310 and BPHYT_RS30315 overlap by 4 nucleotidesBPHYT_RS30315 and BPHYT_RS30320 are separated by 127 nucleotidesBPHYT_RS30320 and BPHYT_RS30325 are separated by 99 nucleotidesBPHYT_RS30325 and BPHYT_RS30330 overlap by 4 nucleotides BPHYT_RS30310: BPHYT_RS30310 - LysR family transcriptional regulator, at 2,355,693 to 2,356,643 _RS30310 BPHYT_RS30315: BPHYT_RS30315 - LysR family transcriptional regulator, at 2,356,640 to 2,357,539 _RS30315 BPHYT_RS30320: BPHYT_RS30320 - MFS transporter, at 2,357,667 to 2,358,989 _RS30320 BPHYT_RS30325: BPHYT_RS30325 - 4-oxalomesaconate hydratase, at 2,359,089 to 2,360,138 _RS30325 BPHYT_RS30330: BPHYT_RS30330 - hypothetical protein, at 2,360,135 to 2,360,803 _RS30330
Group Condition BPHYT_RS30310 BPHYT_RS30315 BPHYT_RS30320 BPHYT_RS30325 BPHYT_RS30330
phage 24hr PHYTO MOI 0.1 N.D. -1.8 -0.7 -0.0 N.D.
phage 36hr PHYTO11 MOI 1 N.D. -1.4 -0.6 -0.4 N.D.
phage 36hr PHYTO3 MOI 1 N.D. -1.8 -0.9 +0.3 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. -0.8 -0.8 -0.7 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -0.7 -0.8 -0.6 N.D.
phage 36hr PHYTO4 MOI 0.1 N.D. -1.1 -0.5 -0.3 N.D.
phage 24hr PHYTO10 MOI 10 N.D. -1.4 -0.3 -0.1 N.D.
phage 24hr PHYTO6 MOI 1 N.D. -0.8 -0.8 -0.1 N.D.
phage 36hr PHYTO4 MOI 1 N.D. -1.9 +0.1 +0.2 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -1.0 -0.3 -0.3 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -0.9 -0.2 -0.6 N.D.
phage 36hr PHYTO10 MOI 10 N.D. -1.1 -0.3 -0.2 N.D.
phage 36hr PHYTO2 MOI 1 N.D. -0.7 -0.9 +0.1 N.D.
phage 24hr PHYTO10 MOI 10 N.D. -1.0 -0.7 +0.3 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -1.1 +0.4 -0.4 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. -0.5 +0.3 -0.7 N.D.
phage 36hr PHYTO6 MOI 1 N.D. -0.5 -0.6 +0.3 N.D.
phage 24hr PHYTO3 MOI 10 N.D. -1.2 +0.2 +0.2 N.D.
phage 24hr PHYTO6 MOI 10 N.D. -1.2 -0.1 +0.7 N.D.
phage 36hr PHYTO11 MOI 0.1 N.D. -0.8 -0.3 +0.6 N.D.
phage P. phyto corn MOI 1 N.D. -1.0 +0.1 +0.4 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. +0.7 -0.5 -0.3 N.D.
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days N.D. +0.3 -0.8 +0.4 N.D.
in planta Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days N.D. -0.4 -0.4 +0.7 N.D.
nitrogen source D-Alanine (N) N.D. +0.7 +0.2 -0.7 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. -0.7 +0.6 +0.3 N.D.
phage P. phyto PHYTO2 MOI 1 N.D. +0.6 -0.5 +0.3 N.D.
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. -0.4 +0.9 +0.2 N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X N.D. +1.2 -0.1 -0.2 N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB N.D. +0.5 -0.5 +0.9 N.D.
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