Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS30145	BPHYT_RS30150	BPHYT_RS30155	BPHYT_RS30160	BPHYT_RS30165
carbon source	propionate (C)	-4.8	-4.8	-3.6	+0.4	+0.1
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	-0.9	+0.1	-0.4	-1.8	-1.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-1.5	-0.3	-0.6	-0.3	-0.5
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-1.3	-0.8	-0.0	-0.5	-0.4
nitrogen source	L-Lysine (N)	-2.0	-0.3	-0.2	-0.1	-0.0
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB	-0.5	-0.9	+0.1	-1.0	-0.1
phage	36hr PHYTO3 MOI 1	-1.3	-0.7	+0.1	-0.5	-0.1
phage	P. phyto corn MOI 0.1	-1.1	-0.8	+0.1	-0.6	-0.1
phage	36hr PHYTO8 MOI 10	-0.8	-0.2	-0.3	-1.1	+0.1
phage	24hr PHYTO3 MOI 1	-1.5	-0.3	-0.0	-0.9	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-1.3	-0.2	+0.2	-0.7	-0.3
phage	P. phyto corn MOI 1	-0.1	-0.7	-0.2	-1.0	-0.3
carbon source	Phenylacetic 5 mM (C)	-0.5	-1.1	-0.6	-0.0	-0.1
phage	PHYTO3 MOI 0.1	-1.5	-0.3	-0.2	-0.3	+0.0
phage	36hr PHYTO3 MOI 0.1	-0.6	-0.2	+0.0	-1.3	-0.3
phage	36hr PHYTO9 MOI 0.1	-0.2	-0.6	+0.2	-1.1	-0.2
phage	36hr PHYTO8 MOI 10	-1.2	-0.6	-0.3	-0.2	+0.4
replicable vector efficiency	Conjugation on LB_DAP agar plate with WM3064 carrying pBBR1-MCS5; outgrowth in LB_gent50	-1.2	-0.4	+0.0	-0.4	+0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.5	-0.1	+0.4	-1.1	-0.4
phage	36hr PHYTO6 MOI 0.1	-0.9	-0.9	-0.0	+0.0	+0.3
carbon source	2-Deoxy-D-ribonic lithium salt (C)	-1.5	-0.3	-0.1	+0.5	-0.1
phage	24hr PHYTO1 MOI 1	-1.2	-0.4	-0.1	-0.2	+0.4
lb_dap plate control and outgrow on gent	LB_DAP agar plate, outgrowth in LB_gent	-1.5	+0.4	+0.3	-0.2	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.7	-0.7	+0.1	+0.5	-0.3
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.4	-0.5	-0.2	-0.4	+0.7
phage	36hr PHYTO2 MOI 1	-1.3	-0.3	-0.1	+0.8	+0.2
nophagecontrol	24hr Phyto Lib Only	-1.2	-0.3	+0.5	+0.3	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.8	-0.8	-0.2	+0.6	-0.2
in planta	Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.3	-0.5	-0.0	+1.5	+1.1
in planta	Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.0	-0.1	-0.2	+1.0	+1.1