Fitness for 5 genes in Burkholderia phytofirmans PsJN

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 321 experiments or choose conditions or try the comparative fitness browser

500 ntBPHYT_RS30080 and BPHYT_RS30085 are separated by 159 nucleotidesBPHYT_RS30085 and BPHYT_RS30090 are separated by 124 nucleotidesBPHYT_RS30090 and BPHYT_RS30095 are separated by 135 nucleotidesBPHYT_RS30095 and BPHYT_RS30100 are separated by 54 nucleotides BPHYT_RS30080: BPHYT_RS30080 - antibiotic biosynthesis monooxygenase, at 2,303,313 to 2,303,627 _RS30080 BPHYT_RS30085: BPHYT_RS30085 - hypothetical protein, at 2,303,787 to 2,304,746 _RS30085 BPHYT_RS30090: BPHYT_RS30090 - hypothetical protein, at 2,304,871 to 2,306,454 _RS30090 BPHYT_RS30095: BPHYT_RS30095 - RND transporter, at 2,306,590 to 2,306,925 _RS30095 BPHYT_RS30100: BPHYT_RS30100 - copper oxidase, at 2,306,980 to 2,308,275 _RS30100
Group Condition BPHYT_RS30080 BPHYT_RS30085 BPHYT_RS30090 BPHYT_RS30095 BPHYT_RS30100
nitrogen source L-Lysine (N) N.D. +1.3 +0.1 N.D. -5.0
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -3.4 +0.1 N.D. +0.1
carbon source 2-Deoxy-D-ribonic lithium salt (C) N.D. -3.0 +0.1 N.D. -0.4
phage P. phyto PHYTO2 MOI 1 N.D. -0.4 -0.9 N.D. -1.5
tn7 efficiency Conjugation on LB_DAP agar plate with WM3064 carrying pRH19; outgrowth in LB_gent50 N.D. -1.8 -0.1 N.D. -0.6
carbon source D-Galacturonic Acid (C) N.D. -2.1 -0.3 N.D. +0.0
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days N.D. -1.1 -0.3 N.D. -0.9
motility outer cut, LB soft agar motility assay N.D. -1.7 +0.2 N.D. -0.3
carbon source Phenylacetic 5 mM (C) N.D. -1.8 +0.1 N.D. +0.4
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X N.D. -1.5 +0.3 N.D. +0.3
carbon source adipate (C) N.D. -1.5 +0.0 N.D. +0.7
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -1.7 -0.2 N.D. +1.2
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. +0.2 +0.7 N.D. -1.5
carbon source propionate (C) N.D. -1.2 +0.4 N.D. +0.5
phage 24hr PHYTO2 MOI 1 N.D. +1.1 -0.5 N.D. -0.9
phage 36hr PHYTO3 MOI 1 N.D. +1.3 -0.5 N.D. -1.0
in planta Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 N.D. +1.0 +0.1 N.D. -1.2
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X N.D. -0.9 +0.6 N.D. +0.6
phage 24hr PHYTO9 MOI 10 N.D. +1.6 -0.3 N.D. -0.9
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB N.D. -0.8 +0.4 N.D. +0.9
phage 36hr PHYTO MOI 0.1 N.D. +1.5 -0.2 N.D. -0.9
phage 36hr PHYTO6 MOI 1 N.D. +1.3 -0.2 N.D. -0.6
phage 36hr PHYTO8 MOI 0.1 N.D. +1.5 -0.4 N.D. -0.5
phage 24hr PHYTO10 MOI 10 N.D. +1.6 -0.3 N.D. -0.3
phage 36hr PHYTO2 MOI 0.1 N.D. +1.6 +0.0 N.D. -0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. +0.9 -0.3 N.D. +0.9
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) N.D. +0.6 -0.2 N.D. +1.4
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. +1.9 -0.0 N.D. -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. +0.4 +0.5 N.D. +1.3
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. +2.1 -0.0 N.D. +0.5
remove
BPHYT_RS30080
plot		 remove
BPHYT_RS30085
plot		 remove
BPHYT_RS30090		 remove
BPHYT_RS30095
plot		 remove
BPHYT_RS30100
plot