Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS29940	BPHYT_RS29945	BPHYT_RS29950	BPHYT_RS29955	BPHYT_RS29960
phage	24hr PHYTO3 MOI 0.1	-0.2	-2.9	-2.3	-0.0	+0.1
phage	36hr PHYTO11 MOI 0.1	-0.2	-2.0	-0.6	-0.0	-0.1
phage	24hr PHYTO2 MOI 1	-0.4	-1.1	-1.1	+0.3	-0.1
phage	36hr PHYTO2 MOI 1	+0.1	-0.4	-1.5	+0.1	-0.6
phage	36hr PHYTO10 MOI 1	+0.1	-1.5	-0.9	+0.3	-0.2
phage	24hr PHYTO4 MOI 10	-0.2	-0.8	-1.7	+0.2	+0.4
nophagecontrol	36hr Phyto Lib Only	-0.4	-1.3	-0.4	+0.2	-0.2
phage	PHYTO3 MOI 0.1	-0.2	-1.9	-0.9	+0.3	+0.6
phage	36hr PHYTO6 MOI 10	-0.2	-1.8	-0.2	+0.3	-0.3
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB	-0.2	+0.4	-2.3	-0.1	+0.3
nitrogen source	L-Phenylalanine (N)	-0.4	-1.6	-0.1	-0.2	+0.5
phage	24hr PHYTO4 MOI 0.1	-0.1	-1.9	-0.3	+0.3	+0.3
phage	24hr PHYTO11 MOI 1	+0.1	-1.3	-1.2	+0.5	+0.3
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB	-0.3	+1.2	-1.7	-0.4	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.1	-0.8	-1.5	+0.5	+0.3
phage	P. phyto corn MOI 1	-0.0	-2.1	+0.6	+0.1	+0.1
phage	36hr PHYTO8 MOI 10	+0.3	-1.1	-1.1	+0.3	+0.5
phage	36hr PHYTO10 MOI 10	-0.1	-1.7	+0.5	+0.5	+0.1
phage	24hr PHYTO7 MOI 1	+0.4	-0.8	-0.8	+0.4	+0.1
phage	P. phyto corn MOI 0.1	+0.1	-2.0	+0.8	+0.2	+0.2
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.3	-0.9	-0.7	+0.4	+0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.2	-1.0	+1.1	+0.7	-0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.1	-1.2	+1.5	+0.8	-0.2
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.1	-0.8	+0.6	+0.5	+1.2
carbon source	D-Glucosamine Hydrochloride (C)	+0.2	-0.2	+0.2	+0.9	+1.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.1	-0.6	+0.2	+0.1	+2.9
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	+0.4	+1.0	+1.1	+0.1	-0.0
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	+0.4	+1.5	+0.6	+0.3	-0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.1	+0.6	+1.0	+0.6	+1.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.2	-0.1	+2.0	+1.1	+0.0