Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS29885	BPHYT_RS29890	BPHYT_RS29895	BPHYT_RS29900	BPHYT_RS29905
vitamin	With vitamins t2	-0.3	+0.1	N.D.	N.D.	-1.5
phage	36hr PHYTO10 MOI 1	-0.0	-0.2	N.D.	N.D.	-1.4
phage	36hr PHYTO6 MOI 0.1	-0.7	+0.1	N.D.	N.D.	-0.8
phage	36hr PHYTO4 MOI 1	-0.6	+0.3	N.D.	N.D.	-0.9
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.9	+0.3	N.D.	N.D.	-0.4
phage	36hr PHYTO2 MOI 1	-0.0	+0.5	N.D.	N.D.	-1.3
phage	P. phyto corn MOI 0.1	-0.5	+0.6	N.D.	N.D.	-0.7
nitrogen source	L-Phenylalanine (N)	-0.2	-1.0	N.D.	N.D.	+0.6
vitamin	With vitamins t1	-0.4	+0.5	N.D.	N.D.	-0.6
supernatant control	Vogels_fungal_media 0.1X	-0.1	+0.5	N.D.	N.D.	-1.0
nutrient	L-Histidine	+0.1	+0.6	N.D.	N.D.	-1.1
carbon source	Suberic (C)	+0.1	+0.8	N.D.	N.D.	-1.1
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	+0.4	+0.3	N.D.	N.D.	-0.8
phage	P. phyto PHYTO2 MOI 0.1	-0.2	+0.7	N.D.	N.D.	-0.6
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB	+0.4	-0.8	N.D.	N.D.	+0.5
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.1	+0.9	N.D.	N.D.	-0.4
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.8	+0.3	N.D.	N.D.	-0.6
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB	+0.3	+0.8	N.D.	N.D.	-0.6
phage	P. phyto PHYTO2 MOI 1	+0.4	+1.1	N.D.	N.D.	-0.7
carbon source	D-Glucose 20 mM (C)	+0.6	+0.6	N.D.	N.D.	-0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.3	+0.7	N.D.	N.D.	+0.6
phage	36hr PHYTO8 MOI 10	+0.1	-0.3	N.D.	N.D.	+1.2
carbon source	2-Deoxy-D-ribonic lithium salt (C)	-0.1	+1.2	N.D.	N.D.	+0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.3	+0.1	N.D.	N.D.	+1.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.5	+0.7	N.D.	N.D.	+1.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.1	+0.0	N.D.	N.D.	+1.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.0	+0.3	N.D.	N.D.	+1.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.4	+2.4	N.D.	N.D.	-0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.2	+1.0	N.D.	N.D.	+1.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.2	+1.0	N.D.	N.D.	+1.7