Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS29615	BPHYT_RS29620	BPHYT_RS29625	BPHYT_RS29630	BPHYT_RS29640
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB	N.D.	-4.5	-0.0	-0.8	-0.1
carbon source	D,L-Lactate (C)	N.D.	-4.4	+0.2	-0.3	-0.0
carbon source	Suberic (C)	N.D.	-4.1	+0.0	+0.4	-0.1
nitrogen source	NAG (N)	N.D.	+0.1	+0.3	-2.8	-1.1
nitrogen source	L-Citrulline (N)	N.D.	-2.9	-0.2	-0.4	+0.2
nitrogen source	Ammonium chloride (N)	N.D.	-2.2	-0.1	-0.8	+0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	-3.3	-0.1	-0.3	+0.8
phage	24hr PHYTO6 MOI 10	N.D.	-3.3	-0.0	+0.2	+0.1
phage	24hr PHYTO3 MOI 10	N.D.	-0.9	+0.3	-1.7	-0.6
nitrogen source	L-Proline (N)	N.D.	-0.5	-0.1	-1.2	-0.9
phage	36hr PHYTO8 MOI 10	N.D.	-1.6	+0.1	-1.1	-0.1
motility	inner cut, LB soft agar motility assay	N.D.	-2.1	-0.1	-0.5	+0.2
nitrogen source	L-Lysine (N)	N.D.	-1.6	+0.1	-0.7	-0.3
lb_dap plate control and outgrow on gent	LB_DAP agar plate, outgrowth in LB_gent	N.D.	-2.2	+0.1	-0.7	+0.4
carbon source	D-Glucose (C)	N.D.	-1.3	+0.3	-0.9	-0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	-2.3	-0.2	+0.1	+0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	-2.1	-0.1	-0.3	+0.6
carbon source	NAG (C)	N.D.	+0.8	+0.5	-2.3	-0.8
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	-3.0	-0.1	-0.1	+1.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	N.D.	-2.6	-0.0	+0.3	+0.7
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	-2.6	+0.0	+0.9	+0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	-2.0	-0.2	+0.6	+0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	N.D.	-2.1	+0.2	+0.8	+0.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	-2.0	+0.3	+1.0	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	N.D.	-1.6	+0.1	+1.1	-0.2
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB	N.D.	-1.6	-0.1	+1.0	+0.3
phage	24hr PHYTO10 MOI 1	N.D.	+1.8	+0.3	-0.9	-0.2
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	+1.8	-0.0	-0.3	+0.8
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	+2.0	+0.1	+0.4	-0.2
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	+2.1	+0.4	+1.0	+0.1