Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS29405 and BPHYT_RS29410 overlap by 4 nucleotidesBPHYT_RS29410 and BPHYT_RS29415 are separated by 13 nucleotidesBPHYT_RS29415 and BPHYT_RS29420 are separated by 66 nucleotidesBPHYT_RS29420 and BPHYT_RS29425 are separated by 203 nucleotides BPHYT_RS29405: BPHYT_RS29405 - aldolase, at 2,152,524 to 2,153,186 _RS29405 BPHYT_RS29410: BPHYT_RS29410 - HPr kinase, at 2,153,183 to 2,154,493 _RS29410 BPHYT_RS29415: BPHYT_RS29415 - 3-hydroxyisobutyrate dehydrogenase, at 2,154,507 to 2,155,397 _RS29415 BPHYT_RS29420: BPHYT_RS29420 - GntR family transcriptional regulator, at 2,155,464 to 2,156,168 _RS29420 BPHYT_RS29425: BPHYT_RS29425 - IclR family transcriptional regulator, at 2,156,372 to 2,157,196 _RS29425
Group Condition BPHYT_RS29405 BPHYT_RS29410 BPHYT_RS29415 BPHYT_RS29420 BPHYT_RS29425
carbon source 2-Deoxy-D-ribonic lithium salt (C) N.D. -0.5 N.D. -0.1 -1.8
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days N.D. -0.9 N.D. -0.4 -1.0
phage 24hr PHYTO9 MOI 10 N.D. -0.2 N.D. -1.4 -0.5
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days N.D. +0.3 N.D. -0.8 -0.9
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) N.D. +0.5 N.D. -0.7 -0.9
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. +0.7 N.D. -0.7 -1.2
in planta Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 N.D. +0.8 N.D. -0.4 -1.4
phage 36hr PHYTO1 MOI 10 N.D. +0.7 N.D. -0.2 -1.1
phage 36hr PHYTO6 MOI 10 N.D. +0.9 N.D. -0.5 -0.9
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. -0.1 N.D. +1.2 -1.4
phage 36hr PHYTO11 MOI 1 N.D. +0.8 N.D. -0.3 -0.8
phage 24hr PHYTO2 MOI 0.1 N.D. +0.9 N.D. -0.4 -0.8
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. +0.9 N.D. -0.8 -0.4
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. +0.9 N.D. -0.4 -0.8
phage 24hr PHYTO2 MOI 0.1 N.D. +0.9 N.D. -0.7 -0.4
nophagecontrol 36hr Phyto Lib Only N.D. +0.9 N.D. -0.0 -1.1
phage 36hr PHYTO1 MOI 10 N.D. +1.1 N.D. -0.7 -0.5
phage 36hr PHYTO10 MOI 10 N.D. +1.2 N.D. -0.4 -0.6
phage 36hr PHYTO8 MOI 10 N.D. +1.4 N.D. -0.8 -0.1
phage 36hr PHYTO2 MOI 1 N.D. +1.4 N.D. -0.5 -0.2
phage 36hr PHYTO2 MOI 1 N.D. +1.3 N.D. -0.3 -0.3
phage 24hr PHYTO3 MOI 1 N.D. +1.4 N.D. -0.6 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. +1.7 N.D. +0.0 -0.4
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. +1.3 N.D. +0.5 -0.2
carbon source Disodium Glutarate (C) N.D. -0.2 N.D. -0.2 +2.0
carbon source Disodium Glutarate (C) N.D. +0.2 N.D. -0.4 +2.0
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. +0.4 N.D. +1.0 +0.8
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. +1.0 N.D. +0.7 +0.7
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. +0.9 N.D. +0.9 +0.6
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. +5.9 N.D. -0.5 -0.2
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