Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS29145 and BPHYT_RS29150 are separated by 164 nucleotidesBPHYT_RS29150 and BPHYT_RS29155 are separated by 69 nucleotidesBPHYT_RS29155 and BPHYT_RS29160 are separated by 48 nucleotidesBPHYT_RS29160 and BPHYT_RS29165 are separated by 708 nucleotides BPHYT_RS29145: BPHYT_RS29145 - LysR family transcriptional regulator, at 2,094,607 to 2,095,491 _RS29145 BPHYT_RS29150: BPHYT_RS29150 - lysine transporter LysE, at 2,095,656 to 2,096,294 _RS29150 BPHYT_RS29155: BPHYT_RS29155 - hypothetical protein, at 2,096,364 to 2,096,711 _RS29155 BPHYT_RS29160: BPHYT_RS29160 - transporter, at 2,096,760 to 2,098,472 _RS29160 BPHYT_RS29165: BPHYT_RS29165 - hypothetical protein, at 2,099,181 to 2,100,038 _RS29165
Group Condition BPHYT_RS29145 BPHYT_RS29150 BPHYT_RS29155 BPHYT_RS29160 BPHYT_RS29165
phage 36hr PHYTO11 MOI 1 -1.1 -0.8 -0.5 -0.7 -0.7
phage 24hr PHYTO MOI 0.1 -1.4 -0.8 -0.5 -0.0 -0.7
phage 36hr PHYTO7 MOI 1 +0.0 -0.2 -1.5 +0.1 -1.4
phage 36hr PHYTO6 MOI 0.1 -0.1 +0.0 +0.0 -0.3 -2.5
phage 36hr PHYTO6 MOI 0.1 -0.3 -0.8 +0.1 -0.1 -1.6
nitrogen source L-Glutamic (N) -0.6 -1.0 -0.2 -0.0 -0.5
phage 24hr PHYTO1 MOI 10 -0.4 +0.1 -0.9 -0.4 -0.8
temperature LB, 37C -0.4 -0.7 +0.2 -0.6 -0.6
phage 24hr PHYTO4 MOI 10 -1.2 -0.4 +0.1 +0.3 -0.7
phage 24hr PHYTO4 MOI 0.1 -0.2 -1.2 -0.3 +0.6 -0.9
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.1 -0.0 -0.8 +0.5 -1.3
phage 24hr PHYTO7 MOI 1 -0.5 -0.9 +0.6 -0.0 -0.8
phage 36hr PHYTO8 MOI 0.1 -0.5 +0.1 +0.3 -0.1 -1.4
phage P. phyto corn MOI 1 -0.0 -0.2 +0.0 +0.5 -1.7
phage 36hr PHYTO10 MOI 1 -0.2 +0.1 -0.4 +0.5 -1.2
supernatant control Vogels_fungal_media 0.1X -0.2 +1.0 +0.3 -0.4 -1.5
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.3 -0.1 -0.1 +0.7 -1.1
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB +0.1 -1.4 -0.2 +0.3 +0.4
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.3 +0.2 +0.3 +0.5 -1.1
phage 24hr PHYTO6 MOI 10 -0.3 +0.6 -0.6 -0.5 +0.4
phage P. phyto PHYTO2 MOI 1 -0.4 +0.9 -0.5 +0.2 -0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.2 +0.9 +0.1 -1.0 -0.1
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.5 -0.7 -0.0 +0.1 +1.3
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days +0.4 +0.7 -0.5 +0.5 -0.8
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days +0.5 +0.9 -0.2 +0.2 -0.7
agar plate interaction control Parafilmed volatile agar plate with no fungus +1.4 +0.2 +0.7 -0.3 -0.8
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days +0.7 +1.1 -0.0 -0.2 -0.3
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.5 +0.4 +0.9 -0.2 +0.8
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days +0.2 +0.9 +0.6 +0.6 -0.5
nitrogen source L-Lysine (N) -0.5 +0.2 +0.8 +0.5 +0.9
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