Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS29060 and BPHYT_RS29065 are separated by 364 nucleotidesBPHYT_RS29065 and BPHYT_RS29075 are separated by 883 nucleotidesBPHYT_RS29075 and BPHYT_RS29080 are separated by 142 nucleotidesBPHYT_RS29080 and BPHYT_RS29085 are separated by 105 nucleotides BPHYT_RS29060: BPHYT_RS29060 - hypothetical protein, at 2,074,858 to 2,075,841 _RS29060 BPHYT_RS29065: BPHYT_RS29065 - hypothetical protein, at 2,076,206 to 2,076,877 _RS29065 BPHYT_RS29075: BPHYT_RS29075 - hypothetical protein, at 2,077,761 to 2,078,660 _RS29075 BPHYT_RS29080: BPHYT_RS29080 - transporter, at 2,078,803 to 2,079,723 _RS29080 BPHYT_RS29085: BPHYT_RS29085 - LysR family transcriptional regulator, at 2,079,829 to 2,080,776 _RS29085
Group Condition BPHYT_RS29060 BPHYT_RS29065 BPHYT_RS29075 BPHYT_RS29080 BPHYT_RS29085
phage P. phyto PHYTO2 MOI 1 -0.4 +0.4 -0.7 +0.3 -3.4
phage 24hr PHYTO6 MOI 1 +0.3 +0.0 -0.7 -0.1 -3.0
phage 36hr PHYTO11 MOI 1 +0.1 -0.1 -0.3 +0.2 -3.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.1 +0.1 -0.1 -0.3 -3.0
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.2 -1.3 -0.2 +0.0 -1.3
phage 24hr PHYTO2 MOI 0.1 +0.5 -0.1 +0.1 -0.4 -3.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.5 -0.6 +0.0 +0.4 -2.5
phage 36hr PHYTO1 MOI 1 +0.4 -0.2 -0.2 +0.0 -3.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.4 +0.0 +0.2 +0.2 -3.7
phage 24hr PHYTO2 MOI 0.1 +0.5 +0.0 -0.3 +0.3 -3.2
phage 24hr PHYTO11 MOI 0.1 -0.2 +0.2 -0.1 +0.5 -2.8
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days +0.3 -1.5 +0.0 +0.3 -1.5
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB +0.8 +0.1 +0.2 -0.0 -3.2
phage 36hr PHYTO8 MOI 10 +0.9 -0.0 +0.1 -0.2 -2.8
carbon source pyruvate (C) -0.4 +0.4 +0.1 +0.1 -2.1
phage 24hr PHYTO9 MOI 10 +0.9 +0.6 -0.4 +0.1 -2.8
carbon source Putrescine (C) +0.3 +0.2 -0.0 +0.2 -2.3
phage 24hr PHYTO3 MOI 10 +1.1 +0.7 -0.7 -0.6 -2.0
phage 36hr PHYTO8 MOI 0.1 +0.4 -0.5 -0.5 +0.4 -1.3
phage 36hr PHYTO4 MOI 0.1 +0.6 +0.4 +0.1 +0.7 -3.1
phage 24hr PHYTO3 MOI 0.1 +0.7 +0.0 -0.7 +0.3 -1.6
phage 36hr PHYTO2 MOI 1 +0.5 -0.3 -0.3 +0.5 -1.5
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.6 +0.7 +0.1 -0.2 -1.7
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.3 +1.9 -0.0 -0.1 -2.3
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB +0.3 +1.3 -0.2 -0.3 -1.0
phage 24hr PHYTO7 MOI 10 +0.2 -1.9 -0.2 +0.3 +2.1
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) -0.6 +1.0 -0.3 -0.3 +0.9
phage 36hr PHYTO3 MOI 0.1 +0.5 -0.2 -0.5 +0.3 +1.8
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days +0.4 -0.6 +0.1 -0.1 +2.2
phage 24hr PHYTO2 MOI 1 +0.6 +0.9 -0.4 +0.6 +0.6
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BPHYT_RS29060
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BPHYT_RS29065
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BPHYT_RS29085
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